View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13096_high_30 (Length: 304)
Name: NF13096_high_30
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Original strand, 26700236 - 26700513
Alignment:
| Q |
18 |
tgtttctgttgaccaaacattggacacccctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttgg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26700236 |
tgtttctgttgaccaaacattggacacccctgcatcggttaatacaaggttgccggttttaagaagggaaagtgttgagcgttttccgttaactggttgg |
26700335 |
T |
|
| Q |
118 |
tcacgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26700336 |
tcacgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtaga |
26700435 |
T |
|
| Q |
218 |
aacctgctgtgaatgtacctttaggtgagactataatgtcgtcttcgaatttttcaactgagagggagaatgatgatg |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26700436 |
aacctgctgtgaatgtacctttaggtgagactataatgtcatcttcgaatttttcaactgagagggagaatgatgatg |
26700513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 46 - 295
Target Start/End: Original strand, 26677091 - 26677340
Alignment:
| Q |
46 |
cctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtag |
145 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26677091 |
cctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtag |
26677190 |
T |
|
| Q |
146 |
cgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtga |
245 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||| || || | || || ||||| || ||||||||||| ||||| |
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| T |
26677191 |
cgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtga |
26677290 |
T |
|
| Q |
246 |
gactataatgtcgtcttcgaatttttcaactgagagggagaatgatgatg |
295 |
Q |
| |
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| ||||||||| | |||| |||||| |||||||||||||||||||||| |
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| T |
26677291 |
cattataatgtcttgttcgggtttttccactgagagggagaatgatgatg |
26677340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 46 - 295
Target Start/End: Complemental strand, 26688999 - 26688750
Alignment:
| Q |
46 |
cctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtag |
145 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26688999 |
cctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtag |
26688900 |
T |
|
| Q |
146 |
cgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtga |
245 |
Q |
| |
|
||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||||| || || | || || ||||| || ||||||||||| ||||| |
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| T |
26688899 |
cgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtga |
26688800 |
T |
|
| Q |
246 |
gactataatgtcgtcttcgaatttttcaactgagagggagaatgatgatg |
295 |
Q |
| |
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| ||||||||| | |||| |||||| |||||||||||||||||||||| |
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| T |
26688799 |
cattataatgtcttgttcgggtttttccactgagagggagaatgatgatg |
26688750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 47 - 230
Target Start/End: Original strand, 26752655 - 26752838
Alignment:
| Q |
47 |
ctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagc |
146 |
Q |
| |
|
||||||| ||||| || ||||| || ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |
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| T |
26752655 |
ctgcatctgttaagacgaggtttccagttttgagaagggaaagtgttgagcgttttccattaactggttggtcacgatttgccatccaaacaatggtagt |
26752754 |
T |
|
| Q |
147 |
gttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
26752755 |
gttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcattttgtcctacagggtagaaacctgctgtgaa |
26752838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 55 - 295
Target Start/End: Complemental strand, 26693142 - 26692902
Alignment:
| Q |
55 |
gttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagcgttgttga |
154 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| | |||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
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|
| T |
26693142 |
gttaatacaaggttcccggttttgagaagggaaagtcttgagcattttccgttaacaggttggtcacgatttgccatccaaacaacggtagcgttggcga |
26693043 |
T |
|
| Q |
155 |
gatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtgagactataat |
254 |
Q |
| |
|
| |||||||||||||| ||||||||||| || || |||||||||||||| || || || || ||||| || |||||||| ||||| ||||| | |||||| |
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| T |
26693042 |
ggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaaacccgcagtgaatgtgccttttggtgatattataat |
26692943 |
T |
|
| Q |
255 |
gtcgtcttcgaatttttcaactgagagggagaatgatgatg |
295 |
Q |
| |
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|| |||||| ||||||||| ||||| ||||||||||||| |
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| T |
26692942 |
atcttcttcgtgtttttcaaccgagagagagaatgatgatg |
26692902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 46 - 263
Target Start/End: Original strand, 26715437 - 26715653
Alignment:
| Q |
46 |
cctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtag |
145 |
Q |
| |
|
||||| |||||||| | ||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
26715437 |
cctgcgtcggttaaaatgaggttgccggtattaagaagggaaagtgtcgagcgttt-ccgttaactggttggtcacgatttgccatccaaacaacggtag |
26715535 |
T |
|
| Q |
146 |
cgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtga |
245 |
Q |
| |
|
| ||| |||| |||||||||||||| ||||||||||| || || |||||||||||||| | || || || || ||||| |||||||| |||| ||||| |
|
|
| T |
26715536 |
cattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcacgtaccggataaaagcctgcggtgaatgtgccttcgggtga |
26715635 |
T |
|
| Q |
246 |
gactataatgtcgtcttc |
263 |
Q |
| |
|
|||||||| ||| ||||| |
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|
| T |
26715636 |
gactataacgtcttcttc |
26715653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 253
Target Start/End: Original strand, 26738676 - 26738883
Alignment:
| Q |
46 |
cctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtag |
145 |
Q |
| |
|
||||| |||||||| | ||||||||||| ||||||||||||| ||| |||||||||||||| ||||| || ||||||||||||| |||||||||||||| |
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|
| T |
26738676 |
cctgcgtcggttaaaatgaggttgccggtattaagaagggaaagtgtcgagcgttttccgtttactggctgttcacgatttgccatccaaacaacggtag |
26738775 |
T |
|
| Q |
146 |
cgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtga |
245 |
Q |
| |
|
| ||| |||| |||||||||||||| ||||||||||| || || |||||||||||||| || ||||| || || || || |||||||| ||||| ||||| |
|
|
| T |
26738776 |
cattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcgcctacaggataaaagcccgcggtgaatgtgcctttgggtga |
26738875 |
T |
|
| Q |
246 |
gactataa |
253 |
Q |
| |
|
||| |||| |
|
|
| T |
26738876 |
gacaataa |
26738883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 26745711 - 26745922
Alignment:
| Q |
46 |
cctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtag |
145 |
Q |
| |
|
||||| |||||||| | |||||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |
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|
| T |
26745711 |
cctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaacggtag |
26745810 |
T |
|
| Q |
146 |
cgttgttgagatttttgtgtttttgggtgaaccatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtga |
245 |
Q |
| |
|
||| || |||||||||||||| ||||||||||| || || |||||||||||||| || || || || ||||| || |||||||| ||||| ||||| |
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|
| T |
26745811 |
gattggaaaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaaacccgcggtgaatgtgcctttgggtga |
26745910 |
T |
|
| Q |
246 |
gactataatgtc |
257 |
Q |
| |
|
|||||||||||| |
|
|
| T |
26745911 |
gactataatgtc |
26745922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 26735403 - 26735522
Alignment:
| Q |
28 |
gaccaaacattggacacccctgcatcggttaatacaaggttgccggttttaagaagggaaaatgttgagcgttttccgttaactggttggtcacgatttg |
127 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||| || |||||||| ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
26735403 |
gaccaaacgttggacaacccagcatcggttaatactagattgccggtattaagaagggaaagtgttgagcgttttccattaactggttgatcacgatttg |
26735502 |
T |
|
| Q |
128 |
ccacccaaacaacggtagcg |
147 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
26735503 |
ccatccaaacaacggtagcg |
26735522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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