View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13096_high_35 (Length: 281)
Name: NF13096_high_35
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_35 |
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| [»] scaffold0035 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0158 (3 HSPs) |
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| [»] scaffold0564 (1 HSPs) |
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| [»] scaffold1407 (1 HSPs) |
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Alignment Details
Target: scaffold0035 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 97483 - 97737
Alignment:
| Q |
29 |
aatagtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaa-cttgaaacttaggattacaatcagcta |
127 |
Q |
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| T |
97483 |
aatagtaataatatatagataataattgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagcta |
97582 |
T |
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| Q |
128 |
tgaatttctattgcttgcctaaaaacttctatgccttttcctttccttt-ctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgc |
226 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||| || |||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
97583 |
tgaatttctaatgcttgcctaaaaacttctcccccttttcctttccttttctagacctatttataggccaagctttcttaaaaacgtgttctggtcgtgc |
97682 |
T |
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| Q |
227 |
ttctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
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| T |
97683 |
ttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
97737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 186
Target Start/End: Original strand, 87790 - 87949
Alignment:
| Q |
29 |
aatagtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaa-cttgaaacttaggattacaatcagcta |
127 |
Q |
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| T |
87790 |
aatagtaataatatatagataataattgaaataaaatagtacgattgtatcaaactgtgaatgaaaaggaaaacttgaaacttaggattacaatcagcta |
87889 |
T |
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| Q |
128 |
tgaatttctattgcttgcctaaaaacttctatgccttttcctttcc-tttctggacctat |
186 |
Q |
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|||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
87890 |
tgaatttctaatgtttgcctaaaaacttctcccccttttcctttccttttctggacctat |
87949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 212 - 280
Target Start/End: Original strand, 87950 - 88018
Alignment:
| Q |
212 |
gtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtggg |
280 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
87950 |
gtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactgaaaaccgttcctgggagtggg |
88018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 18477697 - 18477893
Alignment:
| Q |
87 |
gaatgaaaaggaaacttgaaacttaggattacaatcagctatgaatttctattgcttgcctaaaaa--cttctatgccttttcctttcctttctggacct |
184 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| | | |||||||||| | |||| |||| |
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| T |
18477697 |
gaatgaaaaggaaacttgaaacttaggattacaataagctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct |
18477796 |
T |
|
| Q |
185 |
attaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
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||| ||||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18477797 |
atttataggccaagcttcgtaaaaaacgtgttctggtcgtgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
18477893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 18487793 - 18487989
Alignment:
| Q |
87 |
gaatgaaaaggaaacttgaaacttaggattacaatcagctatgaatttctattgcttgcctaaaaa--cttctatgccttttcctttcctttctggacct |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| | | |||||||||| | |||| |||| |
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| T |
18487793 |
gaatgaaaaggaaacttgaaacttaggattacaatatgctatgaatttctaatgcttgcctaaaaaaacttctctcctttttcctttcttctctgcacct |
18487892 |
T |
|
| Q |
185 |
attaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
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||| ||||||||||||| || ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18487893 |
atttataggccaagcttcctaaaaaatgtgttctggtcatgcttctgcaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
18487989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 186483 - 186234
Alignment:
| Q |
30 |
atagtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctatg |
129 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
186483 |
atagtaataatatatagataataattgaaataaaacagtacgattgtatcaaactgtgaatgaaaaggaaac-tgaaacttaggattacaatcggctatg |
186385 |
T |
|
| Q |
130 |
aatttctattgcttgcctaaaaacttctatgccttttcctttcctttctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttc |
229 |
Q |
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|||||||| |||||| |||||| ||||| | ||| | ||||| |||||||||||| ||||||||||||| |||| |||||||| || |||||| || |
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| T |
186384 |
aatttctaatgcttgtctaaaagcttctct-cctcagctcttcctctctggacctatttataggccaagcttctttaacaacgtgttctgatcgtgcctc |
186286 |
T |
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| Q |
230 |
tgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
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|| ||||| ||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
186285 |
tgcaggtgcagggagtgggagagaaaactggaaaccgttcctggaagtgggg |
186234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 36325 - 36575
Alignment:
| Q |
29 |
aatagtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctat |
128 |
Q |
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|
||||||||| ||||||||||||||||| |||||||| | ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
36325 |
aatagtaatgatatatagataataattgaaataaaacagtacgattgtatcgtactgtgaatgaaaaggaaact-gaaacttaggattacaatcagttat |
36423 |
T |
|
| Q |
129 |
gaatttctattgcttgcctaaaaacttctatgccttttcctttcctttctggacctattaataggccaagctttcttaaaaacgtgttttggtcgtgctt |
228 |
Q |
| |
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||||||||| ||||||||||||||||||| | || | ||||| |||||||||||| ||||||||||||| || | ||||| || || |||||| | |
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| T |
36424 |
gaatttctaatgcttgcctaaaaacttctct-ccgcagctcttcctctctggacctatttataggccaagcttcttttacaacgtattatgatcgtgcct |
36522 |
T |
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| Q |
229 |
ctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
| |
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||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
36523 |
ctgcaggtggagggagtgggagagaaaactggaaaccgttcctggaagtgggg |
36575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 28603 - 28729
Alignment:
| Q |
29 |
aatagtaataatatatagataataattcaaataaaattgaacgattgtatcaaactatgaatgaaaaggaaacttgaaacttaggattacaatcagctat |
128 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| | |||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
28603 |
aatagtaatgatatatagataataattgaaataaaacagtacgattgtat-aaactgtaaatgaaaaggaaact-gaaacttaggattacaatcagttat |
28700 |
T |
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| Q |
129 |
gaatttctattgcttgcctaaaaacttct |
157 |
Q |
| |
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| ||||||| |||||||||||||||||| |
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| T |
28701 |
gcatttctaaagcttgcctaaaaacttct |
28729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 281
Target Start/End: Original strand, 31020 - 31107
Alignment:
| Q |
194 |
ccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgttcctgggagtgggg |
281 |
Q |
| |
|
|||||||| |||| || ||||| || |||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
31020 |
ccaagcttctttaacaatgtgttctgatcgtgcctctgcaggtggagggagtgggagagaaaactggaaaccgttcctggaagtgggg |
31107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 14223646 - 14223561
Alignment:
| Q |
183 |
ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgtt |
268 |
Q |
| |
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||||| ||||||||||||| || ||||||| | || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
14223646 |
ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt |
14223561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 14233741 - 14233656
Alignment:
| Q |
183 |
ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgtt |
268 |
Q |
| |
|
||||| ||||||||||||| || ||||||| | || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
14233741 |
ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt |
14233656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 28386202 - 28386117
Alignment:
| Q |
183 |
ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgtt |
268 |
Q |
| |
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||||| ||||||||||||| || ||||||| | || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
28386202 |
ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatctggaaaccgtt |
28386117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 535 - 620
Alignment:
| Q |
183 |
ctattaataggccaagctttcttaaaaacgtgttttggtcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgtt |
268 |
Q |
| |
|
||||| ||||||||||||| || ||||||| | || ||||||||||| |||||||| ||||||||||||| ||||||||||| |
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|
| T |
535 |
ctatttataggccaagcttcattggaaacgtgctctgatcgtgcttctgcaggtggagcgagtgggagagaaatatggaaaccgtt |
620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 1414 - 1461
Alignment:
| Q |
221 |
tcgtgcttctgtaggtggaggaagtgggagagaaaactggaaaccgtt |
268 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||| ||||||| |
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|
| T |
1414 |
tcgtgcttctgcaggtggagcgagtgggagagaaaactgggaaccgtt |
1461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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