View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_high_41 (Length: 253)
Name: NF13096_high_41
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_41 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 87360 - 87578
Alignment:
| Q |
14 |
tgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87360 |
tgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
87459 |
T |
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| Q |
114 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87460 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
87559 |
T |
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| Q |
214 |
catgtagagttgaagctat |
232 |
Q |
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||||||||||||||||||| |
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| T |
87560 |
catgtagagttgaagctat |
87578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 95390 - 95590
Alignment:
| Q |
14 |
tgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
113 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
95390 |
tgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgcca |
95475 |
T |
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| Q |
114 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
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| T |
95476 |
gaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattc |
95575 |
T |
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| Q |
214 |
catgtagagttgaag |
228 |
Q |
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||||||||||||||| |
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| T |
95576 |
catgtagagttgaag |
95590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 40878923 - 40878705
Alignment:
| Q |
14 |
tgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
113 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878923 |
tgagatgaatatggagtcaaagaagaaattgaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
40878824 |
T |
|
| Q |
114 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878823 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
40878724 |
T |
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| Q |
214 |
catgtagagttgaagctat |
232 |
Q |
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||||||||||||||||||| |
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| T |
40878723 |
catgtagagttgaagctat |
40878705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 40870892 - 40870692
Alignment:
| Q |
14 |
tgagatgaatatggagtcaaagaagaaatttaaaaatgtgaacaagagtgtggaccctcagctatggcatgccgttgcaggaggaatggttcaaatgcca |
113 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
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| T |
40870892 |
tgagatgaatatggagtcaaaaaagaaattgaaaaatgtgaacaagagtgtgg--------------catgccattgcaggaggaatggtgcaaatgcca |
40870807 |
T |
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| Q |
114 |
gaagttaactcacaggtcttctacttccctcagggtcacgccgagcatgcttgtgagcctgtgaatttcagttcttactccaaaattccgtctttcattc |
213 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||| |
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| T |
40870806 |
gaagttaactcacaggtcttttacttccctcagggtcacgccgagcatgcttgtgagccggtgaatttcagtgcttactccaaaattccatctttcattc |
40870707 |
T |
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| Q |
214 |
catgtagagttgaag |
228 |
Q |
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||||||||||||||| |
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| T |
40870706 |
catgtagagttgaag |
40870692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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