View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_high_53 (Length: 221)

Name: NF13096_high_53
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_high_53
NF13096_high_53
[»] chr6 (10 HSPs)
chr6 (1-202)||(27878637-27878839)
chr6 (75-202)||(1234888-1235016)
chr6 (75-202)||(26976133-26976261)
chr6 (75-202)||(18968064-18968192)
chr6 (75-202)||(27873992-27874120)
chr6 (1-124)||(30967674-30967797)
chr6 (75-202)||(30986695-30986827)
chr6 (119-202)||(30966839-30966923)
chr6 (78-202)||(21966738-21966860)
chr6 (92-185)||(23012520-23012614)
[»] chr8 (3 HSPs)
chr8 (1-202)||(9444020-9444222)
chr8 (75-202)||(9439374-9439502)
chr8 (90-146)||(4799315-4799371)
[»] chr5 (5 HSPs)
chr5 (1-202)||(41718597-41718799)
chr5 (75-202)||(41723323-41723451)
chr5 (75-202)||(34360143-34360271)
chr5 (75-202)||(29585302-29585430)
chr5 (92-202)||(34352435-34352546)
[»] chr4 (13 HSPs)
chr4 (1-202)||(48701749-48701951)
chr4 (1-202)||(42266090-42266292)
chr4 (1-202)||(30950111-30950312)
chr4 (75-202)||(42270809-42270937)
chr4 (79-202)||(24520031-24520155)
chr4 (75-202)||(48697133-48697262)
chr4 (75-202)||(30945479-30945606)
chr4 (75-194)||(10427475-10427595)
chr4 (86-185)||(48782932-48783031)
chr4 (139-176)||(1979567-1979604)
chr4 (84-157)||(30165895-30165968)
chr4 (75-156)||(36615361-36615442)
chr4 (126-190)||(17248048-17248112)
[»] chr3 (9 HSPs)
chr3 (1-202)||(5823203-5823405)
chr3 (1-203)||(2817191-2817393)
chr3 (75-202)||(54546071-54546198)
chr3 (75-202)||(5818515-5818643)
chr3 (75-202)||(24659138-24659266)
chr3 (81-186)||(4579254-4579360)
chr3 (87-192)||(31204781-31204885)
chr3 (61-117)||(25877086-25877142)
chr3 (87-175)||(36420132-36420220)
[»] chr2 (12 HSPs)
chr2 (1-202)||(825665-825868)
chr2 (1-202)||(15603064-15603266)
chr2 (82-202)||(5198664-5198785)
chr2 (75-201)||(830322-830450)
chr2 (71-202)||(30396909-30397039)
chr2 (80-185)||(28715965-28716070)
chr2 (86-177)||(31592923-31593015)
chr2 (4-185)||(13843728-13843908)
chr2 (93-185)||(12175768-12175860)
chr2 (78-185)||(13840245-13840350)
chr2 (134-185)||(42117825-42117876)
chr2 (88-137)||(9358158-9358207)
[»] chr7 (7 HSPs)
chr7 (78-202)||(16183636-16183761)
chr7 (49-199)||(8139940-8140090)
chr7 (49-199)||(8138436-8138586)
chr7 (78-202)||(30235209-30235334)
chr7 (78-187)||(36528420-36528529)
chr7 (1-73)||(25441076-25441148)
chr7 (86-202)||(5102606-5102721)
[»] scaffold0074 (1 HSPs)
scaffold0074 (75-202)||(27228-27356)
[»] chr1 (4 HSPs)
chr1 (78-202)||(30697120-30697244)
chr1 (75-202)||(4130272-4130399)
chr1 (75-202)||(46191418-46191544)
chr1 (78-176)||(364683-364781)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27878637 - 27878839
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  27878637 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagagtaacaaaatatta 27878736  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878737 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 27878836  T
Q  200 gta 202  Q
    |||    
T  27878837 gta 27878839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 1235016 - 1234888
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1235016 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 1234917  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  1234916 taaggggaaaaaaccacggggcaagagta 1234888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 26976133 - 26976261
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26976133 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 26976232  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||| ||||||||||||    
T  26976233 taaggggaaaaaaccaaggggcaagagta 26976261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 18968192 - 18968064
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  18968192 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaa 18968093  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  18968092 taaggggaaaaaaccacggggcaagagta 18968064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 27873992 - 27874120
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27873992 ttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 27874091  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    ||| |||||||||||||||||||||||||    
T  27874092 taaagggaaaaaaccacggggcaagagta 27874120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 30967797 - 30967674
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||    
T  30967797 aagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagagtaacaaaatatta 30967698  T
Q  101 tcacgcagctaaaataagagacga 124  Q
    ||| ||||||||||||||||||||    
T  30967697 tcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 30986827 - 30986695
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaa---acccctcaaca 171  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||||    
T  30986827 ttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaatatttacgtggaaagtacccctcaaca 30986728  T
Q  172 aataagg--ggaaaaaaccacggggcaagagta 202  Q
    |||||||    ||||||||||||||||||||||    
T  30986727 aataaggaaaaaaaaaaccacggggcaagagta 30986695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 30966923 - 30966839
Alignment:
Q  119 agacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatatttacgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagta 30966839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 21966860 - 21966738
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataag 177  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | |||||||| ||||||||||||||| ||||||     
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatatttatgtggaaacccctcaataaataaa 21966762  T
Q  178 gggaaaaaaccacggggcaagagta 202  Q
    ||| ||||| || ||||||||||||    
T  21966761 ggg-aaaaatcatggggcaagagta 21966738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 23012520 - 23012614
Alignment:
Q  92 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa 185  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| | |||  || ||||||||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacattatttacgtggaaactcgtcacaaattaaggggaaaaa 23012614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 9444020 - 9444222
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  9444020 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatatta 9444119  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444120 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 9444219  T
Q  200 gta 202  Q
    |||    
T  9444220 gta 9444222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 9439374 - 9439502
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9439374 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 9439473  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  9439474 taaggggaaaaaaccacggggcaagagta 9439502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  90 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 146  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 41718799 - 41718597
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  41718799 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatatta 41718700  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718699 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 41718600  T
Q  200 gta 202  Q
    |||    
T  41718599 gta 41718597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 41723451 - 41723323
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41723451 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 41723352  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  41723351 taaggggaaaaaaccacggggcaagagta 41723323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 34360271 - 34360143
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  34360271 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaa 34360172  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  34360171 taaggggaaaaaaccacggggcaagagta 34360143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 29585302 - 29585430
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29585302 ttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 29585401  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  29585402 taaggggaaaaaaccacggggcaagagta 29585430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 92 - 202
Target Start/End: Complemental strand, 34352546 - 34352435
Alignment:
Q  92 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccac 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  191 ggggcaagagta 202  Q
    ||||||||||||    
T  34352446 ggggcaagagta 34352435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 48701749 - 48701951
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  48701749 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatatta 48701848  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701849 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 48701948  T
Q  200 gta 202  Q
    |||    
T  48701949 gta 48701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 42266292 - 42266090
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||||||||||||||||||    
T  42266292 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagagtaacaaaatatta 42266193  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266192 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 42266093  T
Q  200 gta 202  Q
    |||    
T  42266092 gta 42266090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 30950111 - 30950312
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||    
T  30950111 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagagtaacaaaatatta 30950210  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30950211 tcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccacggggcaaga 30950309  T
Q  200 gta 202  Q
    |||    
T  30950310 gta 30950312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 42270937 - 42270809
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42270937 ttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 42270838  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  42270837 taaggggaaaaaaccacggggcaagagta 42270809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 24520031 - 24520155
Alignment:
Q  79 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataag 177  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  178 gggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagta 24520155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 48697133 - 48697262
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48697133 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 48697232  T
Q  174 taagggg-aaaaaaccacggggcaagagta 202  Q
    ||||||| ||||||||||||||||||||||    
T  48697233 taaggggaaaaaaaccacggggcaagagta 48697262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 30945479 - 30945606
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30945479 ttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 30945578  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    ||| ||||||||| |||||||||||||||    
T  30945579 taa-gggaaaaaatcacggggcaagagta 30945606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 75 - 194
Target Start/End: Complemental strand, 10427595 - 10427475
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  10427595 ttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaa 10427496  T
Q  174 taaggggaaaaaaccacgggg 194  Q
    |||||||||||||| ||||||    
T  10427495 taaggggaaaaaactacgggg 10427475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 48783031 - 48782932
Alignment:
Q  86 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa 185  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| |||||||||||||||||||||||||||||||   |||||||||||| ||||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaatatttacgtggaaatttctcaacaaataaagggaaaaa 48782932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  139 aacacacaatatttacgtggaaacccctcaacaaataa 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1979604 aacacacaatatttacgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 30165968 - 30165895
Alignment:
Q  84 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtg 157  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatatttacgtg 30165895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 36615361 - 36615442
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgt 156  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattatttacgt 36615442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 17248112 - 17248048
Alignment:
Q  126 aaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaaccac 190  Q
    ||||||| |||| || ||||||||||||| |||||| |||| || ||||||||||||||||||||    
T  17248112 aaaagagaaactaaatacacaatatttacatggaaatcccttaataaataaggggaaaaaaccac 17248048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5823203 - 5823405
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  5823203 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatatta 5823302  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823303 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 5823402  T
Q  200 gta 202  Q
    |||    
T  5823403 gta 5823405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 2817191 - 2817393
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| |||||||||| ||||||||||||||||||||||||||    
T  2817191 aagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagagtaacaaaatatta 2817290  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  2817291 tcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaaccacagggcaaga 2817389  T
Q  200 gtaa 203  Q
    ||||    
T  2817390 gtaa 2817393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 54546198 - 54546071
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  54546198 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatatttacgtggaaacccctcaacaaat 54546099  T
Q  175 aaggggaaaaaaccacggggcaagagta 202  Q
    ||||||||||||||||||||| ||||||    
T  54546098 aaggggaaaaaaccacggggctagagta 54546071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 5818515 - 5818643
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  5818515 ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaa 5818614  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  5818615 taaggggaaaaaaccacggggcaagagta 5818643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 24659138 - 24659266
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  24659138 ttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaa 24659237  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  24659238 taaggggaaaaaaccacggggcaagagta 24659266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  81 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggg 179  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  180 gaaaaaa 186  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 31204781 - 31204885
Alignment:
Q  87 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaaa 186  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatatttacgtggaaacccctcaacaaataagaggaaaaaa 31204879  T
Q  187 ccacgg 192  Q
     |||||    
T  31204880 tcacgg 31204885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  61 ctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataa 117  Q
    ||||||||||||| |||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 36420220 - 36420132
Alignment:
Q  87 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaata 175  Q
    ||||||||||||||||| | || ||||||| |||| ||||||| | ||||   ||||| |||||||||||||||| |  ||||||||||    
T  36420220 gtaacaaaatattatcatgtagttaaaatatgagatgagaaaaaaagaacaacacacataatatttacgtggaaatctttcaacaaata 36420132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 825868 - 825665
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  825868 aagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatatta 825769  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataagggg-aaaaaaccacggggcaag 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  825768 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaaaccacggggcaag 825669  T
Q  199 agta 202  Q
    ||||    
T  825668 agta 825665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 15603266 - 15603064
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatatta 100  Q
    ||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| |||| || |||   ||||||| |||||||||    
T  15603266 aagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaaatatta 15603167  T
Q  101 tcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    |||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603166 tcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 15603067  T
Q  200 gta 202  Q
    |||    
T  15603066 gta 15603064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 5198664 - 5198785
Alignment:
Q  82 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataagggg 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  181 aaaaaaccacggggcaagagta 202  Q
    ||||||||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagta 5198785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 830450 - 830322
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  830450 ttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa 830351  T
Q  174 taagggg-aaaaaaccacggggcaagagt 201  Q
    ||||||| |||||||||||||||||||||    
T  830350 taaggggaaaaaaaccacggggcaagagt 830322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 71 - 202
Target Start/End: Original strand, 30396909 - 30397039
Alignment:
Q  71 actattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaac 170  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||||||||||    
T  30396909 actattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atattttcgttgaaacccctcaac 30397007  T
Q  171 aaataaggggaaaaaaccacggggcaagagta 202  Q
    ||||||||| |||||| ||| |||| ||||||    
T  30397008 aaataagggaaaaaaatcacagggcgagagta 30397039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 185
Target Start/End: Complemental strand, 28716070 - 28715965
Alignment:
Q  80 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggg 179  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaatatttacgtggaaacccctcattaaataaggg 28715971  T
Q  180 gaaaaa 185  Q
    ||||||    
T  28715970 gaaaaa 28715965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 86 - 177
Target Start/End: Original strand, 31592923 - 31593015
Alignment:
Q  86 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat-atttacgtggaaacccctcaacaaataag 177  Q
    ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| ||||| ||||||||||||| | ||||| |||||||    
T  31592923 agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataag 31593015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 13843728 - 13843908
Alignment:
Q  4 atttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatca 103  Q
    ||||||||||||||||||| |||||   ||||||||| |||    |||| |||| |||||| ||||||||  | | || |||||||| ||||||||||||    
T  13843728 atttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaaatattatca 13843827  T
Q  104 cgcagctaaaataagagacgagaaaagaggaac-tgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa 185  Q
    || |  |||| ||||    ||||||| || ||  |||||||  ||||||||||||||||||||||||||||||||| ||||||    
T  13843828 cgtaagtaaagtaagttttgagaaaaaagaaaaatgaacac--aatatttacgtggaaacccctcaacaaataaggagaaaaa 13843908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 12175768 - 12175860
Alignment:
Q  93 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa 185  Q
    ||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||  ||||||||  ||||| |||||| || |||||    
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttttgtggaaacatctcaataaataatggaaaaaa 12175860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 13840245 - 13840350
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataag 177  Q
    ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| ||  ||||||||||||| ||  ||  |||||||||| |||    
T  13840245 ggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccga--acacaatatttacatgagaattcctcaacaaacaag 13840342  T
Q  178 gggaaaaa 185  Q
    ||| ||||    
T  13840343 ggggaaaa 13840350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 42117876 - 42117825
Alignment:
Q  134 aactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaaa 185  Q
    ||||||||| ||||||||||||| |||||| |||||  ||||||||||||||    
T  42117876 aactgaacatacaatatttacgtagaaacctctcaattaataaggggaaaaa 42117825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  88 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 137  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 16183636 - 16183761
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaataa 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  177 ggggaaaaaaccacggggcaagagta 202  Q
    ||||||||||||||||||||||||||    
T  16183736 ggggaaaaaaccacggggcaagagta 16183761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 8139940 - 8140090
Alignment:
Q  49 acgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 148  Q
    ||||||||| |||||| |||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
Q  149 atttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    ||||| ||||||||||||||||||||||||||| ||||||| |||| ||||    
T  8140040 atttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaaga 8140090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 199
Target Start/End: Original strand, 8138436 - 8138586
Alignment:
Q  49 acgaaccaagggctctgataccactattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 148  Q
    ||||||||| |||||| |||||||| || |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| |    
T  8138436 acgaaccaatggctctaataccactgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagt 8138535  T
Q  149 atttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaaga 199  Q
    | ||| |||||||||||| |||||| ||||||| ||||||||| |||||||    
T  8138536 aattatgtggaaaccccttaacaaacaaggggagaaaaccacgaggcaaga 8138586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 30235334 - 30235209
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataag 177  Q
    |||||||||||| ||||||||||| || |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30235334 ggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacgaataag 30235235  T
Q  178 gggaa-aaaaccacggggcaagagta 202  Q
    ||||| |||||||||||  |||||||    
T  30235234 gggaaaaaaaccacgggataagagta 30235209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 78 - 187
Target Start/End: Original strand, 36528420 - 36528529
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataag 177  Q
    |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||    
T  36528420 ggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaatatttacgtggaaacccctccacgaataag 36528519  T
Q  178 gggaaaaaac 187  Q
    |  |||||||    
T  36528520 gaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25441148 - 25441076
Alignment:
Q  1 aagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccact 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||    
T  25441148 aagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccact 25441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 202
Target Start/End: Original strand, 5102606 - 5102721
Alignment:
Q  86 agtaacaaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataaggggaaaa 184  Q
    ||||||||||||||||||| || ||||||||| ||| ||| |||||||| ||| || ||| ||||||||| | |||| |||||||||||||||||| |||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatatttacat-gaaaaccctcaacaaataagggg-aaa 5102703  T
Q  185 aaccacggggcaagagta 202  Q
    ||||| || |||||||||    
T  5102704 aaccatggagcaagagta 5102721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 27228 - 27356
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacaaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  27228 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaa 27327  T
Q  174 taaggggaaaaaaccacggggcaagagta 202  Q
    |||||||||||||||||||||||||||||    
T  27328 taaggggaaaaaaccacggggcaagagta 27356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 30697120 - 30697244
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataag 177  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatatttacgtggaaacccctcaacaaataag 30697219  T
Q  178 gggaaaaaaccacggggcaagagta 202  Q
    |||||||| ||||| ||||||||||    
T  30697220 gggaaaaagccacgtggcaagagta 30697244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 4130399 - 4130272
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaat 174  Q
    ||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  4130399 ttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaatttacgtggaaatccctcaacaaat 4130300  T
Q  175 aaggggaaaaaaccacggggcaagagta 202  Q
    || |||||||||||||||||||||||||    
T  4130299 aaagggaaaaaaccacggggcaagagta 4130272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 46191544 - 46191418
Alignment:
Q  75 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaat 174  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  46191544 ttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacaatat-tttacgtggaaacccctcaacaaat 46191446  T
Q  175 aaggggaaaaaaccacggggcaagagta 202  Q
    ||||||||||||||||||| ||||||||    
T  46191445 aaggggaaaaaaccacgggacaagagta 46191418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 364781 - 364683
Alignment:
Q  78 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttacgtggaaacccctcaacaaataa 176  Q
    ||||| ||||||| |||||| |||||  ||  |||||||| ||| ||||||| |||||  || |||||||||||||||| ||| ||||| ||| |||||    
T  364781 ggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaatatttacgttgaatccccttaaccaataa 364683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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