View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_high_7 (Length: 568)

Name: NF13096_high_7
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_high_7
NF13096_high_7
[»] chr2 (3 HSPs)
chr2 (20-218)||(40462809-40463008)
chr2 (463-552)||(40462442-40462531)
chr2 (265-321)||(40462684-40462740)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 40463008 - 40462809
Alignment:
Q  20 aaaaataaagattaggctacacccattaattgaaaagtgattagatggagaaggagtttatagt-gataaactagtagacagctaatgaatttatagtag 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40463008 aaaaataaagattagggtacacccattaattgaaaagtgattagatggagaaggagtttatagtagataaactagtagacagctaatgaatttatagtag 40462909  T
Q  119 ataaagtataaataaatttatagtttatattatcaaattgaacttatagttgatacgatcaaattgaatttagttgacatataaacacattattaaacaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40462908 ataaagtataaataaatttatagtttatattatcaaattgaacttatagttgatacgatcaaattgaatttagttgacatataaacacattattaaacaa 40462809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 463 - 552
Target Start/End: Complemental strand, 40462531 - 40462442
Alignment:
Q  463 aagatatagggtccgatgataagggcagctttcgttctctctcttgatgaatcgttcatatgcttagcaacaaaaacaaatccatacttc 552  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  40462531 aagatatagggtcccatgataagggcagctttcgttctctctcttgatgaatcgttcataagcttagcaactaaaacaaatccatacttc 40462442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 40462740 - 40462684
Alignment:
Q  265 tatcataagttagaaattcaaacgttacttgaaatataatcttaaaataacacttta 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40462740 tatcataagttagaaattcaaacgttacttgaaatataatcttaaaataatacttta 40462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University