View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_high_9 (Length: 496)
Name: NF13096_high_9
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 113 - 483
Target Start/End: Original strand, 239734 - 240104
Alignment:
| Q |
113 |
gtagcagcagcttggaagagaatgagaacatcaggagcggaagtatactgcaagcgccaagttccatccaacttgttaaaatcaattgggtcacccatgt |
212 |
Q |
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| T |
239734 |
gtagcagcagcttggaagagaatgagaacatcaggagcggaagtatactgcaagcgccaagttccatccaacttgttaaaatcaattgggtcacccatgt |
239833 |
T |
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| Q |
213 |
tacttccttccacattcacctgacattgatgattgattataaagaaagaaagaaagaatgctcgaaattgaatgaaaatagagtagtactagtattagta |
312 |
Q |
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| T |
239834 |
tacttccttccacattcacctgacattgatgattgattataaag----aaagaaagaatgctcgaaattgaatgaaaatagagtagtactagtattagta |
239929 |
T |
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| Q |
313 |
actaacaagagcttcctcaatagaagaacgttgatgaggagttgttaagagtcctctttgtgtgtcttggacagatgttaaaagttcatgcttattgttt |
412 |
Q |
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| T |
239930 |
actaacaagagcttcctcaatagaagaacgttgatgaggagttgttaagagtcctctttgtgtgtcttggacagatgttaaaagctcatgcttattgttt |
240029 |
T |
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| Q |
413 |
tctagttcagaatcatatgccttcaaaatcaaatg----aatgaattaattaaaagtgattaacccaatctatct |
483 |
Q |
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| T |
240030 |
tctagttcagaatcatatgccttcaaaatcaaatgaattaattaattaattaaaagtgattaacccaatctatct |
240104 |
T |
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