View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_1 (Length: 1132)

Name: NF13096_low_1
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_1
NF13096_low_1
[»] chr4 (17 HSPs)
chr4 (17-817)||(38412159-38412957)
chr4 (824-1123)||(38411744-38412043)
chr4 (828-1010)||(55606235-55606416)
chr4 (95-505)||(38422420-38422804)
chr4 (828-1006)||(28146982-28147159)
chr4 (828-1009)||(25967999-25968179)
chr4 (828-1001)||(13198078-13198250)
chr4 (828-910)||(11440588-11440670)
chr4 (933-1059)||(11440668-11440797)
chr4 (649-721)||(38407541-38407613)
chr4 (749-819)||(25967801-25967872)
chr4 (78-140)||(38407731-38407791)
chr4 (519-611)||(38422270-38422357)
chr4 (572-630)||(38407632-38407688)
chr4 (749-819)||(28146787-28146858)
chr4 (967-1010)||(29866160-29866203)
chr4 (863-963)||(46308387-46308487)
[»] chr7 (11 HSPs)
chr7 (823-1009)||(25635893-25636079)
chr7 (829-1014)||(39653441-39653626)
chr7 (828-1013)||(47363689-47363874)
chr7 (828-936)||(10493472-10493579)
chr7 (933-992)||(10493376-10493435)
chr7 (828-1014)||(33049115-33049311)
chr7 (924-1009)||(7493053-7493138)
chr7 (752-819)||(47363963-47364030)
chr7 (856-921)||(45435419-45435484)
chr7 (899-992)||(31742958-31743052)
chr7 (910-1008)||(45435503-45435603)
[»] chr2 (9 HSPs)
chr2 (828-1010)||(37794640-37794821)
chr2 (828-1009)||(17988977-17989157)
chr2 (891-1088)||(5430210-5430407)
chr2 (918-1008)||(19263821-19263911)
chr2 (934-1006)||(35016316-35016388)
chr2 (838-923)||(35016457-35016541)
chr2 (829-887)||(5428641-5428699)
chr2 (829-881)||(19263772-19263824)
chr2 (968-1010)||(20929880-20929922)
[»] chr3 (4 HSPs)
chr3 (828-1009)||(11783396-11783577)
chr3 (828-989)||(7299106-7299267)
chr3 (748-817)||(7298925-7298994)
chr3 (955-992)||(53527191-53527228)
[»] chr1 (12 HSPs)
chr1 (855-1009)||(12990541-12990694)
chr1 (829-1015)||(34664779-34664964)
chr1 (823-1009)||(32617560-32617744)
chr1 (828-1009)||(9457617-9457794)
chr1 (828-1009)||(9461714-9461891)
chr1 (828-1003)||(14081707-14081872)
chr1 (748-819)||(32617859-32617931)
chr1 (749-819)||(9457446-9457517)
chr1 (749-819)||(9461543-9461614)
chr1 (750-819)||(12990144-12990214)
chr1 (828-907)||(24699887-24699966)
chr1 (974-1011)||(963102-963139)
[»] chr8 (8 HSPs)
chr8 (828-1006)||(23489962-23490139)
chr8 (920-1009)||(13402173-13402262)
chr8 (933-1014)||(13396888-13396969)
chr8 (828-1006)||(7154249-7154439)
chr8 (951-1002)||(14370805-14370856)
chr8 (828-886)||(14867365-14867423)
chr8 (749-806)||(14867560-14867618)
chr8 (751-816)||(23490243-23490309)
[»] chr5 (11 HSPs)
chr5 (830-1003)||(41283493-41283664)
chr5 (828-1002)||(39426087-39426260)
chr5 (828-1002)||(22927061-22927236)
chr5 (828-1009)||(36491494-36491666)
chr5 (828-1002)||(13424636-13424806)
chr5 (749-815)||(13424887-13424954)
chr5 (749-819)||(19967312-19967383)
chr5 (828-887)||(16341523-16341584)
chr5 (970-1092)||(19967627-19967749)
chr5 (967-1010)||(37247652-37247695)
chr5 (749-819)||(41283294-41283365)
[»] chr6 (7 HSPs)
chr6 (828-997)||(9177588-9177760)
chr6 (889-1008)||(26660607-26660726)
chr6 (889-1008)||(26766578-26766697)
chr6 (828-910)||(32296363-32296445)
chr6 (845-921)||(10117185-10117259)
chr6 (749-819)||(8169240-8169310)
chr6 (967-1014)||(9771928-9771975)
[»] scaffold0989 (1 HSPs)
scaffold0989 (751-797)||(2119-2165)


Alignment Details
Target: chr4 (Bit Score: 668; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 17 - 817
Target Start/End: Complemental strand, 38412957 - 38412159
Alignment:
Q  17 tctctctcatatataataatgtaagggtaatgtactatttttctaacttcctactcaatgcaatcaatgctttttagcttttgtaatttcaattatatgt 116  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412957 tctctctcatatataat---gtaagggtaatgtactatttttctaacttcctactcaatgcaatcaatgctttttagcttttgtaatttcaattatatgt 38412861  T
Q  117 tcattcaaaactgctttagtatttctagtttcttatcctaagtttggattaatcacatatatttaagggtgcaaaactaaagaaaattagttgatcatca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412860 tcattcaaaactgctttagtatttctagtttcttatcctaagtttgtattaatcacatatatttaagggtgcaaaactaaagaaaattagttgatcatca 38412761  T
Q  217 aattttttgaatcaa-gaggatgagttttggatgaattat-----taccttctctcactcccaacataattcaaagtaattttattttattagataagtg 310  Q
    ||||||||||||||| ||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412760 aattttttgaatcaaagaggatgagttttggatgaattatattattaccttctctcactcccaacataattcaaagtaattttattttattagataagtg 38412661  T
Q  311 ccctacctaatggccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgaggacaattcttgatatataacaaact 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38412660 ccctacctaatggccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgaggacaattcttgatatatgacaaact 38412561  T
Q  411 tgaaaatgatattttccattgaaagagtttaacatttgttatgtgaagcaacaaaatatccattatgtgatataaaacacatgacaattatcatattaac 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412560 tgaaaatgatattttccattgaaagagtttaacatttgttatgtgaagcaacaaaatatccattatgtgatataaaacacatgacaattatcatattaac 38412461  T
Q  511 caaccaatatccacaatcataccaaccattgacattagtagatcttactcaatacaacattgtcccaagtgagtgttcattgcaaacatttttgtttgaa 610  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  38412460 caaccaatatctacaatcattccaaccattgacattagtagatcttactcaagacaacattgt-ccaagtgagtgttcattgcaaacatttttgtttgaa 38412362  T
Q  611 atgattaattcttcaagattnnnnnnnnnnnnnnnnttattgaaagatattttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcaca 710  Q
    | ||||||| ||||||||||                |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412361 a-gattaatgcttcaagatt---aaaaaaaataaaattattgaaagatcttttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcaca 38412266  T
Q  711 tttagtttgctctactatatcgttgatactagtcttagaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgac 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412265 tttagtttgctctactatatcgttgatactagtcttagaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgac 38412166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 824 - 1123
Target Start/End: Complemental strand, 38412043 - 38411744
Alignment:
Q  824 tatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatct 923  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  38412043 tatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacataatgttatttccttatctagtttagaactccaaatct 38411944  T
Q  924 atctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatata 1023  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38411943 atctctaggttaagttatttacattcctatcattgtttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatc 38411844  T
Q  1024 tgtaacggccgaaatggtgaaatcatatacacgacctggaccttgaccgcgaccgttgtttaaaacctttcggctgctaaaaatgtttttgtgatgatgt 1123  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38411843 tgtaacagccgaaatggtgaaatcatatacatgacctggaccttgaacgcgaccgttgtttaaaacctttcggctgctaaaaatatttttgtgatgatgt 38411744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 828 - 1010
Target Start/End: Complemental strand, 55606416 - 55606235
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| | |||||||||||| ||||||||| |||||| ||||| ||||||||||||  ||||||||||||| |||||||||||| ||||||| |||    
T  55606416 ttttcaattgatatagatgaaaattatatttttagtacatatttgatcataaattacataa-gttatttccttatatagtttagaactccaaatctttct 55606318  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1010  Q
    |||| ||||||||||||  || |||||||||||||| ||||||||||||||||||||||||||||  |||||||||| |||||    
T  55606317 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaatgcgacaaccgtaatct 55606235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 95 - 505
Target Start/End: Complemental strand, 38422804 - 38422420
Alignment:
Q  95 ttttgtaatttcaattatatg---ttcattcaaaactgctttagtattt----ctagtttcttatcctaagtttggattaatcacatatatttaagggtg 187  Q
    |||||||||||||||||| |    |||||||||||| | ||||||||||    |||||||||||||||||||||| ||         |||||||||||||    
T  38422804 ttttgtaatttcaattatgttcatttcattcaaaaccgatttagtatttatttctagtttcttatcctaagtttgtat---------atatttaagggtg 38422714  T
Q  188 caaaactaaagaaaattagttgatcatcaaattttttgaatcaa-gaggatgagttttggatgaattattaccttctctcactcccaacataattcaaag 286  Q
    ||||||||||||||||| ||||||||| |||  | ||||||||| ||||||  ||||||||||||||||| ||||  |  |   ||||||||||||||||    
T  38422713 caaaactaaagaaaattggttgatcatgaaaagtcttgaatcaaagaggataggttttggatgaattattcccttgccctag--ccaacataattcaaag 38422616  T
Q  287 taattttattttattagataagtgccctacctaatggccatatggtggaaacacgatataaaatgtcttcatacaaaactactagactgtaacaacgagg 386  Q
    |||||| |  |||||||||||||| ||||    ||||||| | ||||||| |||||||||||| |||||||                     |||| |||    
T  38422615 taattt-acattattagataagtggccta----atggccacacggtggaagcacgatataaaacgtcttca---------------------caacaagg 38422542  T
Q  387 acaattcttgatatata--acaaacttgaaaatgatattttccattgaaagagttt-aacatttgttatgtgaagcaacaaaatatccattatgtgatat 483  Q
    |||||||||||||||||  |||||||||||||||||| ||| | |||||||||||| ||||||||| |||||||||||||||||||||||||||| | ||    
T  38422541 acaattcttgatatatataacaaacttgaaaatgatactttaccttgaaagagttttaacatttgtcatgtgaagcaacaaaatatccattatgtcaaat 38422442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 828 - 1006
Target Start/End: Original strand, 28146982 - 28147159
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||  ||||| |||||||||| ||||||| | ||||||| ||     
T  28146982 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacata-agttatctccttatctaatttagaattccaaatctttcc 28147080  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1006  Q
    |||| ||||||||||||  ||  ||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  28147081 ctagtttaagttatttaagttgataatattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgca 28147159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 828 - 1009
Target Start/End: Original strand, 25967999 - 25968179
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| | |||||||| ||||||||||||  |||||| ||||| ||||||||||||  ||||| | ||||||||||||||||| ||| |||| |||    
T  25967999 ttttcaattgatatagatgataatcatatttttggtacatatttgataataaattacataa-gttatcttcttatctagtttagaacgtcagatctttct 25968097  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||| ||||||||| ||  |  |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  25968098 ctagtttaagttatgtaagtgactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcgacaaccgcaatc 25968179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 828 - 1001
Target Start/End: Complemental strand, 13198250 - 13198078
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| ||||| |||||||||||||| ||| | |||| ||||| ||||||||||||  ||||| |||||||||| ||||||||| ||||||| | |    
T  13198250 ttttcaattgagatacatgaaaatcatattcttagtgcatatttgatcataaattacataa-gttatctccttatctaatttagaactccaaatctttgt 13198152  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaa 1001  Q
    |||| |||||||||  |  || | |||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  13198151 ctagtttaagttatcaaagttacgatcattgtttaagagttgtgcaatgttgtgattaattcacaccgcgacaa 13198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 828 - 910
Target Start/End: Original strand, 11440588 - 11440670
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagttta 910  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| | ||||| |||||||    
T  11440588 ttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacataatgttatcttcttatatagttta 11440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 933 - 1059
Target Start/End: Original strand, 11440668 - 11440797
Alignment:
Q  933 ttaagttatttacattcctatcattatt---taaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatatgtaac 1029  Q
    |||||||||||||||| |||||||||||   ||| |||||  ||||||||||||||||||||| |||||||||  ||||| ||||  ||| ||  |||||    
T  11440668 ttaagttatttacattactatcattattatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataacgcaacattcgtaac 11440767  T
Q  1030 ggccgaaatggtgaaatcatatacacgacc 1059  Q
     |||||||| |||||||||||| |||||||    
T  11440768 agccgaaatcgtgaaatcatatccacgacc 11440797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 649 - 721
Target Start/End: Complemental strand, 38407613 - 38407541
Alignment:
Q  649 attgaaagatattttttaatggcgatatccaccgaaagattaatgctgatttgtgaatcacatttagtttgct 721  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||||  |||||||    
T  38407613 attgaaagattttttttaatggcaatatccacagaaagattaatgctaatttgtgaatcacattgggtttgct 38407541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 25967801 - 25967872
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||| ||||||||||| ||||||||||||    
T  25967801 aggttttaaaatatggtccgttaccgagaataaggctgcgacaaaaaggtataggtagcggacgttaccgtt 25967872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 38407791 - 38407731
Alignment:
Q  78 aatcaatgctttttagcttttgtaatttcaattatatgttcattcaaaactgctttagtattt 140  Q
    |||||| |||||||||||||||||||||||||  ||||||||||||||||  |||||||||||    
T  38407791 aatcaaagctttttagcttttgtaatttcaat--tatgttcattcaaaaccactttagtattt 38407731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 519 - 611
Target Start/End: Complemental strand, 38422357 - 38422270
Alignment:
Q  519 atccacaatcataccaaccattgacattagtagatcttactcaatacaacattgtcccaagtgagtgttcattgcaaacatttttgtttgaaa 611  Q
    ||||||||||||||||||||||   ||||| |||||||||| || ||||||||||| |||||||  |||| ||| |||||||| |||||||||    
T  38422357 atccacaatcataccaaccatt---attagcagatcttactgaagacaacattgtctcaagtga--gttccttgtaaacatttctgtttgaaa 38422270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 572 - 630
Target Start/End: Complemental strand, 38407688 - 38407632
Alignment:
Q  572 gtcccaagtgagtgttcattgcaaacatttttgtttgaaatgattaattcttcaagatt 630  Q
    |||||||||||||  |||||| |||||||||||||||||| ||||||| ||||||||||    
T  38407688 gtcccaagtgagt--tcattgtaaacatttttgtttgaaaagattaatgcttcaagatt 38407632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 28146787 - 28146858
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    ||||||||||||| ||||  |||| ||||||||||| || ||||||| ||||||||||| ||| ||||||||    
T  28146787 aggttttaaaaaacggtctgttacggagaaaaaggccgcaacaaaaaggtataggtagcggacattaccgtt 28146858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 967 - 1010
Target Start/End: Original strand, 29866160 - 29866203
Alignment:
Q  967 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1010  Q
    |||||||||||||||||||||||||| | |||||||| ||||||    
T  29866160 ttgtgcaatgttgtgattaattcacaccacgacaaccacaatct 29866203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 863 - 963
Target Start/End: Complemental strand, 46308487 - 46308387
Alignment:
Q  863 tacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctct-aggttaagttatttacattcctatcattattt 961  Q
    |||||| ||||| ||||||||||||  ||||| ||||||  ||||||||||||  |||||| ||||| |  ||||||||||||  || ||||||||||||    
T  46308487 tacatatttgatcataaattacataa-gttatctccttagttagtttagaactctaaatctctctctcaatttaagttatttaagttactatcattattt 46308389  T
Q  962 aa 963  Q
    ||    
T  46308388 aa 46308387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 5e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 823 - 1009
Target Start/End: Complemental strand, 25636079 - 25635893
Alignment:
Q  823 gtatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatc 922  Q
    |||| ||||||||| | ||||||||||||||||| |||| |||||| || || |||||||||||| |||||| ||||| |||||||||||||| ||||||    
T  25636079 gtattttttcaattgaaatagatgaaaatcatatctttagtacatatttaatcataaattacataatgttatctccttgtctagtttagaactccaaatc 25635980  T
Q  923 tatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    ||||| ||| ||||||||||||||||  ||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  25635979 tatctttagtttaagttatttacattattatcattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 25635893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 829 - 1014
Target Start/End: Complemental strand, 39653626 - 39653441
Alignment:
Q  829 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctc 928  Q
    |||||||| | ||||||||| |||||||||||| |||||| ||||| |||||||||||| |||||| || ||||||||||||||||| ||| | ||| ||    
T  39653626 tttcaattgaaatagatgaacatcatatttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaactccaactttatatc 39653527  T
Q  929 taggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1014  Q
    ||| ||||||||||||| || |||||||||||||| ||||||| ||| |||||||||||||||| ||| |||||| ||||| ||||    
T  39653526 tagtttaagttatttacgttgctatcattatttaagagttgtggaatattgtgattaattcacaccgcaacaaccacaatccataa 39653441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 828 - 1013
Target Start/End: Complemental strand, 47363874 - 47363689
Alignment:
Q  828 ttttcaattaagat-agatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 926  Q
    ||||||||| |||| ||||||||| |||||||||| |||||| ||||| ||| ||||||||  ||||| |||||||||||||||||||||||||||| ||    
T  47363874 ttttcaattgagattagatgaaaagcatatttttagtacatatttgatcatagattacataa-gttatctccttatctagtttagaacttcaaatctttc 47363776  T
Q  927 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctata 1013  Q
    ||||| ||||||||||||  ||  ||||||||||||| | |||||||||||| ||||||||||||| |  |||||||||||| ||||    
T  47363775 tctagtttaagttatttaagttattatcattatttaagacttgtgcaatgttttgattaattcacaccaagacaaccgcaatttata 47363689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 828 - 936
Target Start/End: Complemental strand, 10493579 - 10493472
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||| ||||||| ||||||||||| | |||| ||||| |||||||||||| |||||| ||||||| ||||||||| || |||||| ||||    
T  10493579 ttttcaattgagatggatgaaa-tcatatttttaatgcatatttgatcataaattacataatgttatctccttatatagtttagacctccaaatccatct 10493481  T
Q  928 ctaggttaa 936  Q
    |||| ||||    
T  10493480 ctagtttaa 10493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 933 - 992
Target Start/End: Complemental strand, 10493435 - 10493376
Alignment:
Q  933 ttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcaca 992  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||    
T  10493435 ttaagttatttacgttactatcattatttaagagttgtgcaatgttgtgattaattcaca 10493376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 828 - 1014
Target Start/End: Original strand, 33049115 - 33049311
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttcctt----------atctagtttagaacttc 917  Q
    ||||||||| |||| ||||||||||| ||||||| |||||| ||||  |||||||||| |  ||||| |||||          |||||||||| ||||||    
T  33049115 ttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacagaaggttatctcctttatgctctttatctagttta-aacttc 33049213  T
Q  918 aaatctatctctaggttaagttatttacattcctat-cattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1014  Q
    |||||||||||||  | ||||||||||  ||  ||| |||||||||| |||||||||||||| ||||||||||||| | |||| ||| ||||| ||||    
T  33049214 aaatctatctctatttcaagttatttaagttattatacattatttaagagttgtgcaatgttttgattaattcacacctcgacgaccacaatccataa 33049311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 924 - 1009
Target Start/End: Complemental strand, 7493138 - 7493053
Alignment:
Q  924 atctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||||||| |||| |||||||| || |||||||||||||| ||||||| |||||||||||||||||||| || || |||| |||||    
T  7493138 atctctagtttaaattatttacgttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgtgataaccacaatc 7493053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 752 - 819
Target Start/End: Complemental strand, 47364030 - 47363963
Alignment:
Q  752 ttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccgtt 819  Q
    |||||||||| ||||| ||||||||||||||||  | |||||||||||||||||| ||||||||||||    
T  47364030 ttttaaaaaacggtccgttaccgagaaaaaggccaccacaaaaagtataggtagcggacgttaccgtt 47363963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 856 - 921
Target Start/End: Original strand, 45435419 - 45435484
Alignment:
Q  856 tttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaat 921  Q
    |||||| |||||| ||||| |||||||||||| |||||| || |||||||||||||||||||||||    
T  45435419 tttttagtacatatttgatcataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 899 - 992
Target Start/End: Original strand, 31742958 - 31743052
Alignment:
Q  899 ttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctat-cattatttaaaagttgtgcaatgttgtgattaattcaca 992  Q
    ||||||| || | |||||||||||||||||||  ||||||||||||  ||  ||| |||||||||| |  |||||||||||||||||||||||||    
T  31742958 ttatctacttcaaaacttcaaatctatctctaatttaagttatttaagttattatacattatttaagaactgtgcaatgttgtgattaattcaca 31743052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 910 - 1008
Target Start/End: Original strand, 45435503 - 45435603
Alignment:
Q  910 agaacttcaaatctatctctaggttaagttat--ttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaa 1007  Q
    |||||||||||| |||||| |  |||||||||  || |||| |||| ||||||||| ||||||||||| |||| ||||||||||| ||||| ||| ||||    
T  45435503 agaacttcaaatttatctccaatttaagttatatttccattactattattatttaagagttgtgcaatattgttattaattcacaccgcgataactgcaa 45435602  T
Q  1008 t 1008  Q
    |    
T  45435603 t 45435603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 3e-48; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 828 - 1010
Target Start/End: Complemental strand, 37794821 - 37794640
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| ||||||| |||||||||||||||| |||||| ||||| ||||||||||||  ||||| |||||||||||||||||||| ||||||| |||    
T  37794821 ttttcaattgagatagaagaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttct 37794723  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1010  Q
    || |  |||||||| ||  || |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||    
T  37794722 ctggtctaagttatctaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaaccgcaatct 37794640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 828 - 1009
Target Start/End: Complemental strand, 17989157 - 17988977
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||| ||||||||||||||||||| |||||| ||||| |||||||| ||| | |||| |||||||||||||||||||| ||||||| | |    
T  17989157 ttttcaattgagatcgatgaaaatcatatttttagtacatatttgatcataaattatataat-ttatctccttatctagtttagaactccaaatcttttt 17989059  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||| ||||||||||||  || |||||||||||||| ||||||||||| |||||||||||||||| | ||||||||||||||    
T  17989058 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatattgtgattaattcacacctcgacaaccgcaatc 17988977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 891 - 1088
Target Start/End: Original strand, 5430210 - 5430407
Alignment:
Q  891 ttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattca 990  Q
    |||| |||||||||| ||||||| | ||| ||||||||||| ||||||||||||  || |||||||||||||| ||||||||||| ||||||||||||||    
T  5430210 ttatctccttatctactttagaaatccaactctatctctagtttaagttatttatgttactatcattatttaagagttgtgcaatattgtgattaattca 5430309  T
Q  991 cagcgcgacaaccgcaatctataatacaatatatgtaacggccgaaatggtgaaatcatatacacgacctggaccttgaccgcgaccgttgtttaaaa 1088  Q
    || |||||||||| |||||| |||| ||| ||  |||||  ||||||| || ||||||||||| |||||  ||| |||  ||||||| || |||||||    
T  5430310 caccgcgacaaccacaatctgtaatgcaacatccgtaacaaccgaaatcgtaaaatcatatacgcgaccgcgacattgttcgcgaccattatttaaaa 5430407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 918 - 1008
Target Start/End: Original strand, 19263821 - 19263911
Alignment:
Q  918 aaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaat 1008  Q
    ||||||||||||||  |||||||||||  || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||    
T  19263821 aaatctatctctagtataagttatttatgttactatcattatttaagaattgtgcaatgttgtgattaattcacagcgcaacaaccgcaat 19263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 934 - 1006
Target Start/End: Complemental strand, 35016388 - 35016316
Alignment:
Q  934 taagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1006  Q
    |||||||||||  || |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||    
T  35016388 taagttatttaagttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgca 35016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 838 - 923
Target Start/End: Complemental strand, 35016541 - 35016457
Alignment:
Q  838 agatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatct 923  Q
    |||||||||||||||||||||||  |||||| ||||| |||||||| |||  ||||| |||||||||||||||||| | |||||||    
T  35016541 agatagatgaaaatcatatttttgatacatatttgatcataaattatata-agttatctccttatctagtttagaattccaaatct 35016457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 829 - 887
Target Start/End: Original strand, 5428641 - 5428699
Alignment:
Q  829 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacata 887  Q
    |||||||| |||||||||||||||||||| ||| |||||| ||||| ||||||||||||    
T  5428641 tttcaattgagatagatgaaaatcatattattagtacataattgatcataaattacata 5428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 829 - 881
Target Start/End: Original strand, 19263772 - 19263824
Alignment:
Q  829 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaat 881  Q
    |||||||| |||||||||||||||||||||||| |||||| ||||| ||||||    
T  19263772 tttcaattgagatagatgaaaatcatatttttaatacatatttgatcataaat 19263824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 968 - 1010
Target Start/End: Original strand, 20929880 - 20929922
Alignment:
Q  968 tgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1010  Q
    |||||| |||||||||||||||||| |||||||||||| ||||    
T  20929880 tgtgcattgttgtgattaattcacaccgcgacaaccgcgatct 20929922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 3e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 828 - 1009
Target Start/End: Complemental strand, 11783577 - 11783396
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||| | |||| | ||||| |||||||||||||| |||||||||||    
T  11783577 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacacaatgttgtctccttgtctagtttagaactccaaatctatct 11783478  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    || | ||||||| ||||  || |||||||||||||| |||||||||||||||| |||| ||||||  ||||||||| |||||    
T  11783477 cttgtttaagttctttatgttactatcattatttaagagttgtgcaatgttgtaattacttcacaaagcgacaaccacaatc 11783396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 828 - 989
Target Start/End: Original strand, 7299106 - 7299267
Alignment:
Q  828 ttttcaattaagata-gatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 926  Q
    ||||||||| ||||| |||||||| |||||||| | |||||| || || |||||||||||| |||||| |||||||||| ||||||| ||||||||||||    
T  7299106 ttttcaattgagatacgatgaaaaccatattttaagtacatatttaatcataaattacataatgttatctccttatctactttagaa-ttcaaatctatc 7299204  T
Q  927 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattc 989  Q
    ||||| ||||||||||||| || ||||| |||||||| |||||| |||||||||| |||||||    
T  7299205 tctagtttaagttatttacgttactatcgttatttaagagttgtacaatgttgtggttaattc 7299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 748 - 817
Target Start/End: Original strand, 7298925 - 7298994
Alignment:
Q  748 gaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccg 817  Q
    |||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||||||    
T  7298925 gaggttttaaaaaacggtccgttaccgagaaaaaggccgcgacaaaaagtatcggtagccgacgttaccg 7298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 955 - 992
Target Start/End: Original strand, 53527191 - 53527228
Alignment:
Q  955 attatttaaaagttgtgcaatgttgtgattaattcaca 992  Q
    ||||||||||||||||||||||||||||||||||||||    
T  53527191 attatttaaaagttgtgcaatgttgtgattaattcaca 53527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 2e-43; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 855 - 1009
Target Start/End: Original strand, 12990541 - 12990694
Alignment:
Q  855 atttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatc 954  Q
    ||||||| |||||| ||||| |||||||||||| | |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||  || |||||    
T  12990541 atttttaatacatatttgatcataaattacataat-ttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttaagttactatc 12990639  T
Q  955 attatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||| ||||||    
T  12990640 attatttaagagttgtgcaatgttgtgactaattcacaccgcgacaactgcaatc 12990694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 829 - 1015
Target Start/End: Original strand, 34664779 - 34664964
Alignment:
Q  829 tttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctc 928  Q
    |||||||| |||||||||||||||||||||| | ||| || ||||| ||||||||||||  ||||| | |||||||||||||||||| || |||| |||     
T  34664779 tttcaattgagatagatgaaaatcatatttt-agtacgtatttgatcataaattacataacgttatcttcttatctagtttagaactccatatctgtcta 34664877  T
Q  929 taggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataat 1015  Q
    ||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| | || ||||||| ||||| |||||    
T  34664878 tagtttaagttatttacgttactatcattatttaaaagttgtgcaatgttgtaattaattcataccgtgacaaccacaatccataat 34664964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 823 - 1009
Target Start/End: Complemental strand, 32617744 - 32617560
Alignment:
Q  823 gtatcttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatc 922  Q
    |||| ||||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||  ||||| ||||||||||||||| ||||  |||      
T  32617744 gtattttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataaattacataa-gttatctccttatctagttta-aactctaaaga 32617647  T
Q  923 tatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    | ||||||| |||||||||| |  || ||||| |||||||| |||||||||||||||||||||||| ||| ||||||||||||||||    
T  32617646 tttctctagtttaagttattcaagttactatcgttatttaagagttgtgcaatgttgtgattaatttacaccgcgacaaccgcaatc 32617560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 828 - 1009
Target Start/End: Original strand, 9457617 - 9457794
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||||||| ||||||||||||||  ||||||  |||| |||||||||  |  ||||| |||||| || ||||||||||  ||||||   |    
T  9457617 ttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---t 9457712  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  9457713 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 9457794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 828 - 1009
Target Start/End: Original strand, 9461714 - 9461891
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||||||| ||||||||||||||  ||||||  |||| |||||||||  |  ||||| |||||| || ||||||||||  ||||||   |    
T  9461714 ttttcaattgagatagataaaaatcatatttttgatacatatctgatcataaattactcaa-gttatctccttaccttgtttagaactcaaaatct---t 9461809  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||| ||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  9461810 ctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 9461891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 828 - 1003
Target Start/End: Complemental strand, 14081872 - 14081707
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacat-actgttatttccttatctagtttagaacttcaaatctatc 926  Q
    ||||||||| |||||||||||||||| ||||||| || ||| |||||    |||||||| | |||||| || ||||||| |||||||     ||||||||    
T  14081872 ttttcaattgagatagatgaaaatcaaatttttagtatatatttgat----aattacattaatgttatctcattatctaatttagaa-----aatctatc 14081782  T
Q  927 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaacc 1003  Q
    ||||| ||||||||||||  || ||  ||||||||||||||| |||||||||||||||||| ||||  |||||||||    
T  14081781 tctagtttaagttatttaagttgct--cattatttaaaagttatgcaatgttgtgattaatgcacactgcgacaacc 14081707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 748 - 819
Target Start/End: Complemental strand, 32617931 - 32617859
Alignment:
Q  748 gaggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    |||||||||||||| ||||  |||||||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  32617931 gaggttttaaaaaacggtcggttaccgagaaaaaggccgccacaaaaaggtataggtagcggacgttaccgtt 32617859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 9457446 - 9457517
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||| ||||||| ||| |||||| |||||    
T  9457446 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtt 9457517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 9461543 - 9461614
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||| ||||||| ||| |||||| |||||    
T  9461543 aggttttaaaaaatggttcgttaccgagtaaaaggccgcgacaaaaaggtataggcagcggacgttgccgtt 9461614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 750 - 819
Target Start/End: Original strand, 12990144 - 12990214
Alignment:
Q  750 ggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    |||||||||||| ||| | |||||||||||||||| |||| ||||| ||||||||||  ||||||||||||    
T  12990144 ggttttaaaaaacggttcgttaccgagaaaaaggctgcgataaaaaggtataggtagtggacgttaccgtt 12990214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 828 - 907
Target Start/End: Complemental strand, 24699966 - 24699887
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagt 907  Q
    ||||||||| |||||||||||||| ||||||||  || ||| ||||| ||| |||||||| |||||| |  |||||||||    
T  24699966 ttttcaattgagatagatgaaaattatatttttcgtatatatttgataatatattacataatgttatctttttatctagt 24699887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 974 - 1011
Target Start/End: Original strand, 963102 - 963139
Alignment:
Q  974 atgttgtgattaattcacagcgcgacaaccgcaatcta 1011  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  963102 atgttgtgattaattcacaccacgacaaccgcaatcta 963139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 4e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 828 - 1006
Target Start/End: Complemental strand, 23490139 - 23489962
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    ||||||||| |||||||||||||||||||||||  |||||| ||||| ||||||||||||  ||||| |||||||||||||||||||| ||||||| |||    
T  23490139 ttttcaattgagatagatgaaaatcatatttttcgtacatatttgatcataaattacataa-gttatctccttatctagtttagaactccaaatctttct 23490041  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1006  Q
    |||| ||| ||| | ||  || |||||| ||||||| |||||| ||||||||||||||||||||| ||| |||||||||    
T  23490040 ctagtttatgttgtctaagttactatcagtatttaagagttgtacaatgttgtgattaattcacaccgcaacaaccgca 23489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 920 - 1009
Target Start/End: Original strand, 13402173 - 13402262
Alignment:
Q  920 atctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||||| | ||| ||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  13402173 atctatttttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaatc 13402262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 933 - 1014
Target Start/End: Original strand, 13396888 - 13396969
Alignment:
Q  933 ttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1014  Q
    ||||||||||||| || |||||||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||| ||||    
T  13396888 ttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacagccgcaatccataa 13396969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 828 - 1006
Target Start/End: Complemental strand, 7154439 - 7154249
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    |||| ||| ||||||||||||||||||||||||| |||||| ||||| ||| |||||||| |  ||| |||||||||  || ||||||  ||||||||||    
T  7154439 ttttaaatgaagatagatgaaaatcatatttttaatacatatttgatcatatattacataattatatctccttatctgattcagaactcaaaatctatct 7154340  T
Q  928 ctaggttaagttatttacattcctatcattatttaa----------aag--ttgtgcaatgttgtgattaattcacagcgcgacaaccgca 1006  Q
     | | |||||||||||||  |  |||||||||||||          |||  |||||||||||||||||||||||||| | |||||||||||    
T  7154339 atggtttaagttatttacggtattatcattatttaagactttatttaagacttgtgcaatgttgtgattaattcacatcacgacaaccgca 7154249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 951 - 1002
Target Start/End: Original strand, 14370805 - 14370856
Alignment:
Q  951 tatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1002  Q
    ||||||||  ||| |||||||||||||||||||||||||||| | |||||||    
T  14370805 tatcattaagtaagagttgtgcaatgttgtgattaattcacaccacgacaac 14370856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 828 - 886
Target Start/End: Complemental strand, 14867423 - 14867365
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacat 886  Q
    ||||||||| |||| ||||||||||| ||||||| |||||| ||||  |||||||||||    
T  14867423 ttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacat 14867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 749 - 806
Target Start/End: Complemental strand, 14867618 - 14867560
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaag-tataggtagc 806  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||| |||| ||||||||||    
T  14867618 aggttttaaaaaacggtccgttactgagaaaaaggccgcgacagaaagatataggtagc 14867560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 751 - 816
Target Start/End: Complemental strand, 23490309 - 23490243
Alignment:
Q  751 gttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttacc 816  Q
    |||||||| ||  |||| |||| ||||||||||| |||||||||| |||||||||||||| ||||||    
T  23490309 gttttaaagaaccgtccgttactgagaaaaaggccgcgacaaaaaggtataggtagccgaagttacc 23490243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 4e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 830 - 1003
Target Start/End: Original strand, 41283493 - 41283664
Alignment:
Q  830 ttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatctct 929  Q
    ||||||| |||||||||||||||  ||||||| |||| |  |||| |||||||| |||  ||||| |||||||||||||||||||||||||||| |||||    
T  41283493 ttcaattgagatagatgaaaatcccatttttagtacaaatctgatcataaatta-ataa-gttatctccttatctagtttagaacttcaaatctttctct 41283590  T
Q  930 aggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaacc 1003  Q
    || ||||||||||||  || ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||    
T  41283591 agtttaagttatttatgttactatctttattcaaaagttgtgcaatgttgtgattaattcacaccacgacaacc 41283664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 828 - 1002
Target Start/End: Complemental strand, 39426260 - 39426087
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatat-ttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatc 926  Q
    ||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||| ||| || ||||||| |||||||||| | ||||| ||||    
T  39426260 ttttcaattaagatagatgaaaatcatatattttagtacatatttgatcataaattacataatgtcatctccttatatagtttagaa-tccaaatatatc 39426162  T
Q  927 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1002  Q
    | ||  |||||||||||||||| |||||| ||| ||  |||||||||||||||| ||||||||||| |||||||||    
T  39426161 tatat-ttaagttatttacattactatcaatatgtatgagttgtgcaatgttgtaattaattcacaccgcgacaac 39426087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 828 - 1002
Target Start/End: Complemental strand, 22927236 - 22927061
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatac--ttgattataaattacatactgttatttccttatctagtttagaacttcaaatctat 925  Q
    ||||||||| |||||||||||||||||||||||  |||| ||  ||||| |||||| ||||| |||||| || || ||||||||||||| || |||||||    
T  22927236 ttttcaattgagatagatgaaaatcatattttttgtacacacatttgatcataaatcacata-tgttatctcattgtctagtttagaacctcgaatctat 22927138  T
Q  926 ctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1002  Q
    |||||| ||||||||||||  || || ||||||||||| ||||| |||||||||||||||||||||  |||||||||    
T  22927137 ctctagtttaagttatttatgttactttcattatttaagagttgggcaatgttgtgattaattcacgtcgcgacaac 22927061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 828 - 1009
Target Start/End: Original strand, 36491494 - 36491666
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaatctatct 927  Q
    |||||||||||||||||||||||||||||||||| |||||| || || ||||         ||||  ||||| |||||||||||||||  ||||||||||    
T  36491494 ttttcaattaagatagatgaaaatcatatttttagtacatatttaatcataa---------tgttggttcctcatctagtttagaactcaaaatctatct 36491584  T
Q  928 ctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatc 1009  Q
    |||| ||| ||||||||| || ||||||| |||||| | || ||||||||| ||||||||||||| || |||||||| ||||    
T  36491585 ctagtttatgttatttactttactatcatcatttaagaattttgcaatgttatgattaattcacaccgtgacaaccgtaatc 36491666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 828 - 1002
Target Start/End: Complemental strand, 13424806 - 13424636
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttcctta-tctagtttagaacttcaaatctatc 926  Q
    ||||||||| | ||| |||||||| ||||||||| |||||| ||||| |||||| || ||  ||||| |||||| |||| ||||||| |  |||||| ||    
T  13424806 ttttcaattgaaataaatgaaaataatatttttagtacatatttgatcataaatcacgtaa-gttatctccttaatctattttagaattctaaatctttc 13424708  T
Q  927 tctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcgacaac 1002  Q
    ||||  ||||||||||||  ||    ||||||||||| |||||||||||||||||||||||||||| | |||||||    
T  13424707 tctattttaagttatttaagtt----tcattatttaagagttgtgcaatgttgtgattaattcacaccacgacaac 13424636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 749 - 815
Target Start/End: Complemental strand, 13424954 - 13424887
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttac 815  Q
    ||||||||||| |||||||||||||||||||||| | |||| ||||| |||||||||||||| |||||    
T  13424954 aggttttaaaatatggtccattaccgagaaaaagaccgcgaaaaaaaggtataggtagccgatgttac 13424887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 19967312 - 19967383
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaa-gtataggtagccgacgttaccgtt 819  Q
    |||||||||||||  |||||||||||||||||||||  || |||||| ||| |||||||||| |||||||||    
T  19967312 aggttttaaaaaacagtccattaccgagaaaaaggccacggcaaaaaggtacaggtagccgaagttaccgtt 19967383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 828 - 887
Target Start/End: Complemental strand, 16341584 - 16341523
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgat--tataaattacata 887  Q
    ||||||||| ||||||||||||| |||||||||| |||||| |||||  |||||||||||||    
T  16341584 ttttcaattgagatagatgaaaaacatatttttagtacatatttgatcatataaattacata 16341523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 970 - 1092
Target Start/End: Original strand, 19967627 - 19967749
Alignment:
Q  970 tgcaatgttgtgattaattcacagcgcgacaaccgcaatctataatacaatatatgtaacggccgaaatggtgaaatcatatacacgacctggaccttga 1069  Q
    |||||||||||||||||||| ||  |||||||||||||||  |  | ||| |    ||||||||||||| | |||||| ||| | | |||| ||||||||    
T  19967627 tgcaatgttgtgattaattctcactgcgacaaccgcaatcagtgttgcaacacccataacggccgaaatcgcgaaatcctatccgcaacctcgaccttga 19967726  T
Q  1070 ccgcgaccgttgtttaaaacctt 1092  Q
    | ||||||||| |||||||||||    
T  19967727 ctgcgaccgttatttaaaacctt 19967749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 967 - 1010
Target Start/End: Original strand, 37247652 - 37247695
Alignment:
Q  967 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatct 1010  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||    
T  37247652 ttgtgcattgttgtgattaattcacaccgcgacaaccacaatct 37247695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 749 - 819
Target Start/End: Original strand, 41283294 - 41283365
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaa-agtataggtagccgacgttaccgtt 819  Q
    ||||||||||||| ||||| ||||  |||||||||  | ||||||| |||||||||||| ||||||||||||    
T  41283294 aggttttaaaaaacggtccgttactaagaaaaaggtcgtgacaaaaaagtataggtagcggacgttaccgtt 41283365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 6e-34; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 828 - 997
Target Start/End: Original strand, 9177588 - 9177760
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgatt------ataaattacatactgttatttccttatctagtttagaacttcaaat 921  Q
    ||||||||| |||| ||||||||||||||||||| |||||| |||| |      |||||||||||| |||||| ||   | ||||||||||||| |||||    
T  9177588 ttttcaattgagattgatgaaaatcatatttttagtacatatttgaatttgatcataaattacataatgttatctc---acctagtttagaactccaaat 9177684  T
Q  922 ctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaattcacagcgcg 997  Q
    |||||| ||| ||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||| ||||    
T  9177685 ctatctttagtttaagttatttacgttactatcattattcaagagttgtgcaatgttgtgattaattcacaccgcg 9177760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 889 - 1008
Target Start/End: Complemental strand, 26660726 - 26660607
Alignment:
Q  889 tgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaatt 988  Q
    |||||| ||||| | |||||||||||| ||||||| ||| ||| |||| |||||||  || ||||  | |||||| ||||||||||||||||||||||||    
T  26660726 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26660627  T
Q  989 cacagcgcgacaaccgcaat 1008  Q
    |||| || ||||||||||||    
T  26660626 cacaccgtgacaaccgcaat 26660607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 889 - 1008
Target Start/End: Complemental strand, 26766697 - 26766578
Alignment:
Q  889 tgttatttccttatctagtttagaacttcaaatctatctctaggttaagttatttacattcctatcattatttaaaagttgtgcaatgttgtgattaatt 988  Q
    |||||| ||||| | |||||||||||| ||||||| ||| ||| |||| |||||||  || ||||  | |||||| ||||||||||||||||||||||||    
T  26766697 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26766598  T
Q  989 cacagcgcgacaaccgcaat 1008  Q
    |||| || ||||||||||||    
T  26766597 cacaccgtgacaaccgcaat 26766578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 828 - 910
Target Start/End: Original strand, 32296363 - 32296445
Alignment:
Q  828 ttttcaattaagatagatgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagttta 910  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||||||| || ||| ||||||| |||||||    
T  32296363 ttttcaattgagatagatgaaaatcatatttttagtacatatttgatcataagttacataatggtatctccttatatagttta 32296445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 845 - 921
Target Start/End: Original strand, 10117185 - 10117259
Alignment:
Q  845 tgaaaatcatatttttactacatacttgattataaattacatactgttatttccttatctagtttagaacttcaaat 921  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||   | || |||||||||||||||||||| |||||    
T  10117185 tgaaaatcatatttttagtacatatttgatcataaattacata--ataatctccttatctagtttagaactccaaat 10117259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 749 - 819
Target Start/End: Complemental strand, 8169310 - 8169240
Alignment:
Q  749 aggttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagtataggtagccgacgttaccgtt 819  Q
    |||||||||||||  | || |||||||||||||||   |||||||| |||||||||| |||||||||||||    
T  8169310 aggttttaaaaaactgcccgttaccgagaaaaaggtcacgacaaaaggtataggtagtcgacgttaccgtt 8169240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 967 - 1014
Target Start/End: Original strand, 9771928 - 9771975
Alignment:
Q  967 ttgtgcaatgttgtgattaattcacagcgcgacaaccgcaatctataa 1014  Q
    |||||||||||||||||||||||||| |||||| ||| ||||| ||||    
T  9771928 ttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataa 9771975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 751 - 797
Target Start/End: Complemental strand, 2165 - 2119
Alignment:
Q  751 gttttaaaaaatggtccattaccgagaaaaaggcggcgacaaaaagt 797  Q
    ||||||||||| ||||  |||||||||||||||| ||||||||||||    
T  2165 gttttaaaaaacggtctgttaccgagaaaaaggccgcgacaaaaagt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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