View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_11 (Length: 449)
Name: NF13096_low_11
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 14332590 - 14332362
Alignment:
| Q |
9 |
gaagaaaatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
108 |
Q |
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| T |
14332590 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
14332491 |
T |
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| Q |
109 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgccattatagttta |
208 |
Q |
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| T |
14332490 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgccattatagttta |
14332391 |
T |
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| Q |
209 |
taccatcactaatgtaccatcactttcta |
237 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
14332390 |
taccatcactaatgtaccatcactttcta |
14332362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 14425600 - 14425372
Alignment:
| Q |
9 |
gaagaaaatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14425600 |
gaagaatatcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaagttatc |
14425501 |
T |
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| Q |
109 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgccattatagttta |
208 |
Q |
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| T |
14425500 |
aagattaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgccattatagttta |
14425401 |
T |
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| Q |
209 |
taccatcactaatgtaccatcactttcta |
237 |
Q |
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| T |
14425400 |
taccatcactaatgtaccatcactttcta |
14425372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 302 - 428
Target Start/End: Complemental strand, 14332297 - 14332171
Alignment:
| Q |
302 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332297 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
14332198 |
T |
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| Q |
402 |
acacgcctcatgttcttgactacagta |
428 |
Q |
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| T |
14332197 |
acacgcctcatgttcttgactacagta |
14332171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 302 - 428
Target Start/End: Complemental strand, 14425307 - 14425181
Alignment:
| Q |
302 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14425307 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
14425208 |
T |
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| Q |
402 |
acacgcctcatgttcttgactacagta |
428 |
Q |
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| T |
14425207 |
acacgcctcatgttcttgactacagta |
14425181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 312 - 428
Target Start/End: Complemental strand, 44103308 - 44103192
Alignment:
| Q |
312 |
tgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctca |
411 |
Q |
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|||||||||||||||| ||| |||||||||||||| | || |||||||| || |||||||||||||||||||| ||| ||||||| | ||| || ||||| |
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| T |
44103308 |
tgatataggactacgaatacgcgagttacaatcctatcgcgtatgacctggctaatcatttctgtgaaatggcagcagattaccatagtgatacacctca |
44103209 |
T |
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| Q |
412 |
tgttcttgactacagta |
428 |
Q |
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| T |
44103208 |
ttttcttgactacagta |
44103192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 44103475 - 44103388
Alignment:
| Q |
16 |
atcaagagattggtttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaagatcaatcactttaattgtaag |
103 |
Q |
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||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||||| |
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| T |
44103475 |
atcaagagattggtttttgccacaatgacctacaatatggcaacattatgatggatgaagagactagatcaatcaccctaattgtaag |
44103388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 15546070 - 15546019
Alignment:
| Q |
30 |
ttttgtcacaatgatctacaatatggtaacatcatgatggatgaagaaacaa |
81 |
Q |
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||||| ||||||||| |||||||||||||||||||| | ||||||| ||||| |
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| T |
15546070 |
ttttgccacaatgatttacaatatggtaacatcatgcttgatgaagtaacaa |
15546019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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