View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_12 (Length: 432)

Name: NF13096_low_12
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_12
NF13096_low_12
[»] chr4 (37 HSPs)
chr4 (118-226)||(48407106-48407214)
chr4 (283-410)||(48406922-48407049)
chr4 (123-226)||(22606201-22606304)
chr4 (296-383)||(38767764-38767851)
chr4 (291-383)||(52058285-52058377)
chr4 (291-405)||(22606393-22606507)
chr4 (126-226)||(30418237-30418338)
chr4 (118-226)||(38767945-38768053)
chr4 (291-402)||(28963901-28964012)
chr4 (291-405)||(30418430-30418545)
chr4 (118-226)||(53663471-53663579)
chr4 (118-226)||(39732964-39733072)
chr4 (118-226)||(50523707-50523815)
chr4 (296-385)||(53404149-53404238)
chr4 (118-226)||(45105960-45106068)
chr4 (118-224)||(49723936-49724042)
chr4 (126-226)||(28963712-28963813)
chr4 (315-383)||(49723757-49723825)
chr4 (118-226)||(53403952-53404055)
chr4 (126-226)||(8510312-8510411)
chr4 (296-356)||(51834286-51834346)
chr4 (120-194)||(29385882-29385956)
chr4 (296-374)||(53663673-53663751)
chr4 (141-226)||(26457265-26457350)
chr4 (297-374)||(45105789-45105866)
chr4 (310-375)||(28911562-28911627)
chr4 (307-405)||(29386081-29386178)
chr4 (118-175)||(5937729-5937786)
chr4 (310-375)||(26457092-26457157)
chr4 (118-218)||(16202934-16203033)
chr4 (296-356)||(29810238-29810298)
chr4 (296-356)||(18140452-18140512)
chr4 (296-356)||(24038129-24038189)
chr4 (296-356)||(24246618-24246678)
chr4 (296-356)||(31431103-31431163)
chr4 (296-356)||(39383025-39383085)
chr4 (296-356)||(49127665-49127725)
[»] chr7 (23 HSPs)
chr7 (290-405)||(25472797-25472912)
chr7 (297-405)||(30139868-30139976)
chr7 (118-226)||(26826526-26826634)
chr7 (291-405)||(12909180-12909294)
chr7 (120-226)||(25472602-25472709)
chr7 (118-226)||(30139664-30139773)
chr7 (291-383)||(37371052-37371144)
chr7 (118-226)||(26827603-26827707)
chr7 (118-226)||(15000022-15000130)
chr7 (296-383)||(25970406-25970493)
chr7 (122-225)||(43664656-43664758)
chr7 (118-226)||(25970587-25970695)
chr7 (118-226)||(30825344-30825451)
chr7 (304-383)||(26826355-26826434)
chr7 (296-374)||(14999850-14999928)
chr7 (304-374)||(30825172-30825242)
chr7 (310-375)||(39857058-39857123)
chr7 (118-197)||(47158059-47158137)
chr7 (296-356)||(41064609-41064669)
chr7 (122-220)||(2000011-2000107)
chr7 (296-375)||(43664852-43664931)
chr7 (296-356)||(25341512-25341572)
chr7 (296-356)||(31012470-31012530)
[»] chr6 (9 HSPs)
chr6 (291-406)||(365541-365656)
chr6 (291-405)||(21517390-21517504)
chr6 (291-400)||(10683125-10683232)
chr6 (118-200)||(10683335-10683417)
chr6 (310-356)||(31746241-31746287)
chr6 (310-375)||(4146793-4146858)
chr6 (118-226)||(27825153-27825261)
chr6 (132-226)||(20838345-20838439)
chr6 (296-356)||(30018851-30018911)
[»] chr8 (22 HSPs)
chr8 (296-405)||(35802382-35802491)
chr8 (118-226)||(35802180-35802288)
chr8 (291-405)||(8416613-8416727)
chr8 (291-405)||(22936603-22936717)
chr8 (291-405)||(45276436-45276550)
chr8 (118-226)||(36821462-36821571)
chr8 (118-226)||(2025667-2025775)
chr8 (118-225)||(35164217-35164324)
chr8 (304-375)||(36821673-36821744)
chr8 (118-226)||(22936406-22936514)
chr8 (297-383)||(33165764-33165850)
chr8 (118-226)||(8416816-8416925)
chr8 (120-226)||(45276241-45276347)
chr8 (118-226)||(13015833-13015940)
chr8 (318-405)||(44238802-44238889)
chr8 (296-374)||(35164419-35164492)
chr8 (310-371)||(924086-924147)
chr8 (118-200)||(3590251-3590331)
chr8 (296-356)||(629492-629552)
chr8 (178-226)||(7637384-7637432)
chr8 (296-356)||(30210472-30210532)
chr8 (296-356)||(30984369-30984429)
[»] chr5 (31 HSPs)
chr5 (118-226)||(41039972-41040080)
chr5 (291-406)||(41040169-41040284)
chr5 (291-405)||(27739384-27739498)
chr5 (291-405)||(31905381-31905495)
chr5 (291-405)||(37066592-37066706)
chr5 (297-402)||(41742261-41742366)
chr5 (118-226)||(11018265-11018373)
chr5 (118-226)||(41742057-41742166)
chr5 (291-406)||(33229154-33229269)
chr5 (291-405)||(21022665-21022779)
chr5 (291-405)||(39236929-39237043)
chr5 (128-226)||(31905584-31905683)
chr5 (291-405)||(7073308-7073422)
chr5 (291-402)||(21022036-21022147)
chr5 (118-226)||(10900286-10900393)
chr5 (291-405)||(19356451-19356566)
chr5 (119-226)||(8958340-8958447)
chr5 (296-405)||(53705-53813)
chr5 (296-396)||(8958541-8958640)
chr5 (312-374)||(32872636-32872698)
chr5 (141-226)||(53526-53611)
chr5 (129-226)||(40979573-40979669)
chr5 (296-374)||(11018467-11018545)
chr5 (310-375)||(2526265-2526330)
chr5 (296-356)||(3260906-3260966)
chr5 (296-356)||(14082891-14082951)
chr5 (296-356)||(42663434-42663494)
chr5 (118-226)||(25256645-25256758)
chr5 (118-226)||(25320436-25320549)
chr5 (121-218)||(33387539-33387635)
chr5 (296-356)||(29542509-29542569)
[»] chr2 (24 HSPs)
chr2 (291-405)||(37640794-37640908)
chr2 (291-406)||(7473468-7473583)
chr2 (291-400)||(35458218-35458327)
chr2 (118-226)||(7473672-7473780)
chr2 (122-225)||(37640601-37640704)
chr2 (291-405)||(13892703-13892817)
chr2 (291-405)||(14032828-14032942)
chr2 (291-405)||(17480765-17480879)
chr2 (118-226)||(43342112-43342221)
chr2 (291-406)||(14033322-14033437)
chr2 (118-226)||(44002801-44002909)
chr2 (296-405)||(43342315-43342423)
chr2 (134-226)||(35458036-35458129)
chr2 (118-213)||(37996884-37996979)
chr2 (123-210)||(32497051-32497138)
chr2 (296-374)||(3739086-3739163)
chr2 (296-374)||(37996700-37996778)
chr2 (296-356)||(2443733-2443793)
chr2 (118-159)||(17481009-17481050)
chr2 (296-356)||(14379738-14379798)
chr2 (296-356)||(31686855-31686915)
chr2 (296-356)||(31786777-31786837)
chr2 (296-356)||(40254422-40254482)
chr2 (296-356)||(44282572-44282632)
[»] scaffold0068 (2 HSPs)
scaffold0068 (296-405)||(37648-37757)
scaffold0068 (118-226)||(37849-37958)
[»] chr1 (38 HSPs)
chr1 (296-405)||(35604765-35604874)
chr1 (291-405)||(46406372-46406486)
chr1 (291-403)||(6706085-6706197)
chr1 (118-226)||(47655723-47655832)
chr1 (297-405)||(13509979-13510087)
chr1 (118-213)||(4485020-4485115)
chr1 (118-226)||(44740299-44740407)
chr1 (297-402)||(50030791-50030896)
chr1 (118-226)||(46033513-46033621)
chr1 (291-405)||(47655921-47656035)
chr1 (118-226)||(41512298-41512406)
chr1 (118-200)||(6706310-6706392)
chr1 (118-226)||(42137537-42137645)
chr1 (118-220)||(13509776-13509879)
chr1 (310-375)||(11829058-11829123)
chr1 (118-212)||(11050936-11051030)
chr1 (118-226)||(50030982-50031092)
chr1 (118-223)||(49430789-49430894)
chr1 (150-226)||(27416718-27416794)
chr1 (308-375)||(11051212-11051279)
chr1 (136-226)||(24075676-24075766)
chr1 (310-356)||(27575973-27576019)
chr1 (319-383)||(44740119-44740182)
chr1 (300-376)||(46033723-46033799)
chr1 (291-350)||(7385231-7385290)
chr1 (118-226)||(1762372-1762478)
chr1 (118-226)||(27067289-27067396)
chr1 (296-356)||(51488563-51488623)
chr1 (304-374)||(4485229-4485299)
chr1 (169-226)||(7385369-7385427)
chr1 (296-356)||(5271571-5271631)
chr1 (296-356)||(7593271-7593331)
chr1 (296-356)||(15353306-15353366)
chr1 (296-356)||(26821460-26821520)
chr1 (296-356)||(36496119-36496179)
chr1 (296-356)||(38627616-38627676)
chr1 (296-356)||(38843229-38843289)
chr1 (296-356)||(50979303-50979363)
[»] scaffold0097 (2 HSPs)
scaffold0097 (118-226)||(32898-33006)
scaffold0097 (304-398)||(33107-33202)
[»] chr3 (35 HSPs)
chr3 (118-226)||(45150752-45150860)
chr3 (291-402)||(48254537-48254648)
chr3 (291-405)||(45150549-45150663)
chr3 (118-223)||(28182527-28182632)
chr3 (118-226)||(30810862-30810970)
chr3 (291-405)||(39251427-39251541)
chr3 (122-226)||(11263845-11263949)
chr3 (118-226)||(39251630-39251739)
chr3 (118-226)||(42274671-42274779)
chr3 (291-405)||(31813352-31813466)
chr3 (118-225)||(48181224-48181332)
chr3 (118-226)||(42074546-42074650)
chr3 (297-374)||(28182352-28182429)
chr3 (118-223)||(50392657-50392761)
chr3 (122-226)||(51229881-51229985)
chr3 (296-374)||(33025836-33025914)
chr3 (296-374)||(42074374-42074452)
chr3 (126-226)||(48254347-48254448)
chr3 (122-226)||(53687217-53687321)
chr3 (334-405)||(11257776-11257847)
chr3 (296-375)||(51407445-51407524)
chr3 (143-226)||(51407618-51407701)
chr3 (304-374)||(42274500-42274570)
chr3 (304-374)||(48181051-48181121)
chr3 (310-374)||(53687429-53687493)
chr3 (291-336)||(11263711-11263756)
chr3 (296-374)||(51229709-51229787)
chr3 (169-226)||(33025685-33025742)
chr3 (118-197)||(45488944-45489023)
chr3 (118-226)||(44328806-44328914)
chr3 (296-356)||(52692005-52692065)
chr3 (118-226)||(44610664-44610769)
chr3 (296-356)||(47141469-47141529)
chr3 (296-356)||(47697077-47697137)
chr3 (296-356)||(51129082-51129142)
[»] scaffold0808 (2 HSPs)
scaffold0808 (118-200)||(4268-4350)
scaffold0808 (297-399)||(4047-4149)
[»] scaffold0069 (2 HSPs)
scaffold0069 (118-226)||(16965-17073)
scaffold0069 (310-374)||(16797-16861)
[»] scaffold0006 (2 HSPs)
scaffold0006 (118-226)||(91690-91798)
scaffold0006 (311-374)||(91516-91579)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 48407214 - 48407106
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||| |||    
T  48407214 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttatgattaaattttgttcatcaaattaattacaaagcaaaaagaa 48407115  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  48407114 agagaattg 48407106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 283 - 410
Target Start/End: Complemental strand, 48407049 - 48406922
Alignment:
Q  283 gtagaattgattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttt 382  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||    
T  48407049 gtagaattgattggtagcttcaaggataattgcatttggaggatagaagcaattcttaaaagtcaaatcaaacaccattgaaaactcaatttttcatttt 48406950  T
Q  383 taaagatcgtagaatcacttcttacctt 410  Q
    | | | | ||||||||| ||||| ||||    
T  48406949 tgagggttgtagaatcatttcttgcctt 48406922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 22606201 - 22606304
Alignment:
Q  123 aactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggaga 222  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||    
T  22606201 aactcatgaccataaacatttttcgggggctaatttggttcgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggaga 22606300  T
Q  223 attg 226  Q
    ||||    
T  22606301 attg 22606304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 38767851 - 38767764
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  38767851 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattgaaaacttaatttttcactttt 38767764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 52058285 - 52058377
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||    
T  52058285 gatttgtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattgaaaattcagttttttactttt 52058377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 22606393 - 22606507
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||| | | |     
T  22606393 gatttgtagcttcacgaataattgcttttggaggatagaagcaattcttaaaagttaaaccaaacaccattgaaaattcaatttttctcttttgagggtt 22606492  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  22606493 gtagaatcacttctt 22606507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 30418237 - 30418338
Alignment:
Q  126 tcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaat 224  Q
    ||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||    
T  30418237 tcatgaccataaacatttttcgggggctaatttgattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaat 30418336  T
Q  225 tg 226  Q
    ||    
T  30418337 tg 30418338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 38768053 - 38767945
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||| ||||||||| ||||||| || ||||||||| ||||||| ||||||  ||||||||||||||||||||||||||| ||||||||| |||    
T  38768053 ttggtaactcacgaccataaacatttttcaggtgctaatttggttcgctaagttttccgattaaattttgttcatcaaattaattacaaagcaaaaagaa 38767954  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  38767953 ggagaattg 38767945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 28963901 - 28964012
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |||||||||||| ||  |     
T  28963901 gatttgtagctttaagaataattgcttttggaggatataatcaattcttaaaagtcaaaccaaacaccattaaaaactcagtttttcacttttgaatgtt 28964000  T
Q  391 gtagaatcactt 402  Q
    ||||||||||||    
T  28964001 gtagaatcactt 28964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 30418430 - 30418545
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaa-ccaaacaccattcaaaactcaatttttcacttttaaagat 389  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||| |||||||||||||| |||||| |||||    
T  30418430 gatttgtagcttgaaggataattgcttttggaggatagaatcaatttttaaaagccaaacccaaacaccattaaaaactcaattttttacttttgaagat 30418529  T
Q  390 cgtagaatcacttctt 405  Q
      ||||||||||||||    
T  30418530 tatagaatcacttctt 30418545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 53663471 - 53663579
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| ||||||| |||||||||| | |||| || ||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  53663471 ttggtaactcatgaccataaacatttttcaggggctaattaggttcgttaagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 53663570  T
Q  218 ggagaattg 226  Q
    |||| ||||    
T  53663571 ggaggattg 53663579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 39733072 - 39732964
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||  ||||| ||||||| || | || ||||||| ||||||||| |||||||||||||| || ||||||||| |||    
T  39733072 ttggtaactcatgaccataaatattttatgggggttaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 39732973  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  39732972 ggagaattg 39732964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 50523707 - 50523815
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||| ||  |||||| ||||||||| |||||||||||||| || ||||||||| |||    
T  50523707 ttggtaactcatgaccataaatattttatgggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 50523806  T
Q  218 ggagaattg 226  Q
    | |||||||    
T  50523807 gaagaattg 50523815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 385
Target Start/End: Original strand, 53404149 - 53404238
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaa 385  Q
    ||||||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||||| |||| |||||||||||||| ||||||||    
T  53404149 gtagctttaaggagaattgcttttggaggatagaagctatgcttaaaagccaaaccaaacaacattgaaaactcaattttttacttttaa 53404238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 45106068 - 45105960
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| | |||||||||||||| ||| || | || ||||||| ||||||||| ||||||||||||||||| |||| |||| |||    
T  45106068 ttggtaactcatgaccataaacaattttcgggggctaaattggttggttaagttttcttattaaatttggttcatcaaattaattacaaagtaaaaagaa 45105969  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  45105968 agagaattg 45105960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 49724042 - 49723936
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||||||  || |||||||| |||| ||  |||||| ||||||||| ||| ||||||||||||| ||||||||| |||    
T  49724042 ttggtaactcatgaccataaacatttttcaaggactaatttggttcgttaatttttctgattaaatttggtttatcaaattaattacaaagcaaaaagaa 49723943  T
Q  218 ggagaat 224  Q
    |||||||    
T  49723942 ggagaat 49723936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 28963712 - 28963813
Alignment:
Q  126 tcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaat 224  Q
    ||||||||||||| |||||||  |||||||||| ||||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||||    
T  28963712 tcatgaccataaacatttttcaagggctaatttaattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaat 28963811  T
Q  225 tg 226  Q
    ||    
T  28963812 tg 28963813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 49723825 - 49723757
Alignment:
Q  315 cttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  49723825 cttttggaggatagaaacaattcttaaaagccaaaccaaacaccattggaaactcaatttttcactttt 49723757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 53403952 - 53404055
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| ||||||||| |||||||||| |||| || |||||||      |||| ||||||||||||||||| |||||||||  ||    
T  53403952 ttggtaactcatgaccataaacatttttcggtggctaatttggttcgttatgttttct-----gatttggttcatcaaattaattacaaagcaaaaaaaa 53404046  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  53404047 ggagaattg 53404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 8510411 - 8510312
Alignment:
Q  126 tcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaatt 225  Q
    |||||||||||| |||||| |  ||||||||||| |||| || ||||||| ||||||||| |||||| ||||||  || |||||||||||||||||||||    
T  8510411 tcatgaccataattatttt-ctagggctaatttggttcgttaagttttctgattaaatttggttcattaaattagatacaaagcaaaaggaaggagaatt 8510313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 51834286 - 51834346
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  51834286 gtagctttatggagaattgcttttggaggatagaagcaattctgaaaagtcaaaccaaaca 51834346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 29385882 - 29385956
Alignment:
Q  120 ggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatca 194  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||| ||  ||||||||||||||||  |||||||    
T  29385882 ggtaagtcatgaccttaaatatttttcgggggctaatttggttcgttaaattttctaattaaatttgattcatca 29385956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 53663673 - 53663751
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| |||||  | || ||||||||||||    
T  53663673 gtagctttaaggataattgcttttggaggatagaatcaattctaaaaagccaaatcaaacggcgttaaaaactcaattt 53663751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 26457350 - 26457265
Alignment:
Q  141 tttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||  || |||||||| ||||| ||||||||| ||| ||||||||    
T  26457350 tttttcgagggctaatttgattcgtcaagttttctaattaaattcggtacatcaaatcaattaaaaagcaaaaagaatgagaattg 26457265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 45105866 - 45105789
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    |||||| ||| | |||||||| ||||||||| |||||||||| ||||| ||||||||||| |||| ||||||||||||    
T  45105866 tagctttaagaagaattgcttctggaggatataagcaattctgaaaagccaaaccaaacaacattgaaaactcaattt 45105789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 28911627 - 28911562
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||||||||||| ||||||||||||| | ||| |||||||||||  ||||||||||| |||||    
T  28911627 aattgcttttggagggtagaagcaattctgataagccaaaccaaacatgattcaaaactcgatttt 28911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 29386081 - 29386178
Alignment:
Q  307 gataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaatcacttctt 405  Q
    |||||||| |||| || |||| || ||||| ||||||| ||||| |||||||||  |||||||| |||| ||||||| ||| | |||||||||||||||    
T  29386081 gataattgattttcgaagataaaatcaattgttaaaagccaaactaaacaccataaaaaactcagtttt-cacttttgaaggttgtagaatcacttctt 29386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 5937729 - 5937786
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttct 175  Q
    |||||||||||||| ||||||||||||  ||||||||||||| |||| || |||||||    
T  5937729 ttggtaactcatgatcataaatattttatgggggctaatttggttcgttaagttttct 5937786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 26457157 - 26457092
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||| |||||||||||| |||||||||| |||||||||| | |||| | || |||||||||||||    
T  26457157 aattgtttttggaggataaaagcaattctgaaaagtcaaatctaacaactttaaaaactcaatttt 26457092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 16202934 - 16203033
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||||||||| || || |||||||  |||  ||  |||| | ||||||||| |||||||||||||| || ||| ||||| |||    
T  16202934 ttggtaactcatgaccataaatattttccgagg-ctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaagaa 16203032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 29810238 - 29810298
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||||| || | ||||| |||||| ||||||||| | |||||||||||||||||    
T  29810238 gtagcttcaaggagaactccttttagaggatggaagcaattatgaaaagtcaaaccaaaca 29810298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 18140512 - 18140452
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  18140512 gtagcttcaactaaaattgcttttggaggataaaagctattttaaaaagccaaaccaaaca 18140452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 24038129 - 24038189
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  24038129 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 24038189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 24246678 - 24246618
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  24246678 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 24246618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 31431103 - 31431163
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  31431103 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31431163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 39383025 - 39383085
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  39383025 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 39383085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 49127725 - 49127665
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  49127725 gtagcttcaactaaaattgcttttggaggataaaagctattttaaaaagccaaaccaaaca 49127665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 25472797 - 25472912
Alignment:
Q  290 tgattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagat 389  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||| |    
T  25472797 tgatttgtagcttcaaggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaacaccattaaaaactcaatttgtcatttttgaaggt 25472896  T
Q  390 cgtagaatcacttctt 405  Q
     |||||||||||||||    
T  25472897 tgtagaatcacttctt 25472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 30139868 - 30139976
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaa 396  Q
    |||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||    
T  30139868 tagctttaaggataattgtttttggagaatagaatcaattcttaaaagtcaaaccaaacaccattaaaaactcaaattttcacttttaaagattgtagaa 30139967  T
Q  397 tcacttctt 405  Q
    |||||||||    
T  30139968 tcacttctt 30139976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 26826634 - 26826526
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||| ||||||||| |||||||| |||||||| ||||||||| |||    
T  26826634 ttggtaactcatgaccataaacatttttcgggggctaatttggttcgttaagttttctgattaaatttggttcatcacattaattacaaagcaaaaagaa 26826535  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  26826534 ggagaattg 26826526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 12909294 - 12909180
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||  ||||||||||| | | |     
T  12909294 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 12909195  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  12909194 gtagaatcacttctt 12909180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 25472602 - 25472709
Alignment:
Q  120 ggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaag 218  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||||    
T  25472602 ggtaagtcattaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaag 25472701  T
Q  219 gagaattg 226  Q
    ||||||||    
T  25472702 gagaattg 25472709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 30139664 - 30139773
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| |||||||| |||| |||||||||||||||||||| |||| || ||||||||||||||||| ||| |||||||| ||||| ||||||||| ||    
T  30139664 ttggtaagtcatgaccgtaaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggtttatcaaattaaattacaaagcaaaaaga 30139763  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  30139764 aggagaattg 30139773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 291 - 383
Target Start/End: Complemental strand, 37371144 - 37371052
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||| ||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||| ||||||||||||||    
T  37371144 gatttgtagctttaaagataattgcttttggaggatagaaccaattcttaaaagccaaaccaaacatcattaaaaacttaatttttcactttt 37371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 26827603 - 26827707
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||||||| ||||||||||| |||| || ||||    ||||||||| ||||||||||||||||| ||||||||| |||    
T  26827603 ttggtaactcatgaccataaacatttttcgagggctaatttggttcgttaagttt----attaaatttggttcatcaaattaattacaaagcaaaaagaa 26827698  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  26827699 ggagaattg 26827707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 15000130 - 15000022
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| ||||||| |||||||||| | |||  || ||||||| ||||||||| ||||||||||||||||| |||| |||| |||    
T  15000130 ttggtaactcatgaccataaacatttttcaggggctaattaggttctttaagttttctgattaaatttggttcatcaaattaattacaaagaaaaaagaa 15000031  T
Q  218 ggagaattg 226  Q
    |||| ||||    
T  15000030 ggaggattg 15000022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 383
Target Start/End: Complemental strand, 25970493 - 25970406
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    ||||||| || || |||| |||||||||||||||||||||||||||||| |||||||||||||||| || | ||||||||||||||||    
T  25970493 gtagctttaaagagaattacttttggaggatagaagcaattcttaaaagccaaaccaaacaccattgaatattcaatttttcactttt 25970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 43664656 - 43664758
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggag 221  Q
    |||||| |||||||||| |||||| ||||||||||||| |||| ||  |||||| ||||||||| ||||||||||||||||| ||||||||| |||||||    
T  43664656 taactcgtgaccataaacattttt-gggggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggag 43664754  T
Q  222 aatt 225  Q
    ||||    
T  43664755 aatt 43664758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 25970695 - 25970587
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||| |||||||||||||||||||| |  ||||||||||||    || ||||||| ||||||||| ||||||||||||||| | ||||||||| |||    
T  25970695 ttggtaattcatgaccataaatattttttgatggctaatttgatctattaagttttctcattaaatttggttcatcaaattaataacaaagcaaaaagaa 25970596  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  25970595 ggagaattg 25970587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 30825451 - 30825344
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||| ||||||| ||||||| || | || ||||||| ||||||||| ||| ||||||||||||| ||| ||||| |||    
T  30825451 ttggtaactcatgaccataaacatttatcgggggataatttggttggttaagttttctgattaaatttggtt-atcaaattaattacaaaacaaaaagaa 30825353  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  30825352 ggagaattg 30825344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 383
Target Start/End: Complemental strand, 26826434 - 26826355
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    ||||| |||| ||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||| |||||||    
T  26826434 aaggagaattacttttggaggatagaagtaattcttaaaagccaaaccaaataccattgaaaactcaattttccactttt 26826355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 14999928 - 14999850
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||| |||| |||||||||||||||| ||||||| ||||| ||||||||||| |||| ||||||||||||    
T  14999928 gtagctttaaggagaattacttttggaggatagaatcaattctaaaaagccaaaccaaacaacattgaaaactcaattt 14999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 30825242 - 30825172
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||    
T  30825242 aaggagaattgtttttggaggatagaagcaattctaaaaaggcaaaccaaacaacattgaaaactcaattt 30825172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 39857123 - 39857058
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||  ||| |||||||||||||    
T  39857123 aattacttttggaggatagaagcaattctgaaaagtcaaaccaaacatgattgaaaactcaatttt 39857058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 47158059 - 47158137
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaat 197  Q
    |||||||||||||| |||||||||||| | || ||||||||| |||| || ||||||||||||||| | |||||||||||    
T  47158059 ttggtaactcatgatcataaatatttt-ctggagctaatttggttcgttaagttttctaattaaatatggttcatcaaat 47158137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 41064669 - 41064609
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||| | ||| ||||| ||||||||||||||||||||| | ||||| |||||||||||    
T  41064669 gtagctttatggagaattgtttttggaggatagaagcaattatgaaaaggcaaaccaaaca 41064609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 2000011 - 2000107
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaagga 220  Q
    ||||||||||||||||||||||||   ||||||||||| |||| ||  |||| | |||||||||  ||| ||||||||| || ||| ||||| ||||||    
T  2000011 taactcatgaccataaatattttt--tgggctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaatacaaaccaaaaagaagga 2000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 43664852 - 43664931
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||| ||| | |||||||||||||||||||||  |||||| |||||  ||| |||||| |||| |||| ||||||||    
T  43664852 gtagctttaagaaaaattgcttttggaggatagaatgaattctgaaaagctaaaacaaacaacattgaaaattcaatttt 43664931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 25341512 - 25341572
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  25341512 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 25341572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 31012470 - 31012530
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  31012470 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31012530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 365656 - 365541
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||     
T  365656 gatttgtagctttaaggataattgcttttggatgatagaatcaattcttaaaagtcaaaccaaacaccattaaaaactcaatttttcacttttgaagatt 365557  T
Q  391 gtagaatcacttctta 406  Q
    ||||||||| ||||||    
T  365556 gtagaatcatttctta 365541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 21517390 - 21517504
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| ||||||||||| | | |     
T  21517390 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagtcaaaccaaacaccattgaaaattcaacttttcacttttgagggtt 21517489  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  21517490 gtagaatcacttctt 21517504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 400
Target Start/End: Complemental strand, 10683232 - 10683125
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||  |||| |||||||||| ||||||||||||| |||||||||||||||| |||| |||   |||||||||| ||| |     
T  10683232 gatttgtagctttaaggataattaattttagaggatagaatcaattcttaaaagccaaaccaaacaccattaaaaattca--gtttcacttttgaaggtt 10683135  T
Q  391 gtagaatcac 400  Q
    ||||||||||    
T  10683134 gtagaatcac 10683125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 10683417 - 10683335
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaa 200  Q
    ||||||| |||| |||||||| |||| ||||||| ||||||| || | ||  |||||||||||||||| ||||||||||||||    
T  10683417 ttggtaagtcattaccataaacatttatcgggggttaatttggtttgttaaattttctaattaaatttggttcatcaaattaa 10683335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 31746241 - 31746287
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  31746241 aattgcttttggaggatagaagcaattttgaaaagtcaaaccaaaca 31746287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 4146858 - 4146793
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    |||||||||||| || ||||||||||||| ||||| |||||||||||  ||  |||||||||||||    
T  4146858 aattgcttttggggggtagaagcaattctgaaaagccaaaccaaacatgatagaaaactcaatttt 4146793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 27825261 - 27825153
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttcta-attaaattttgttcatcaaattaattataaagcaaaagga 216  Q
    |||||||||| ||||||||||||||||| | || |||||||| |||| ||  |||| |  ||||||||| |||||||||||||| || |||  |||| ||    
T  27825261 ttggtaactcctgaccataaatattttttgtgg-ctaatttggttcgttaaattttttggattaaatttggttcatcaaattaaatacaaacgaaaaaga 27825163  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  27825162 aggagaattg 27825153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 226
Target Start/End: Original strand, 20838345 - 20838439
Alignment:
Q  132 ccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    |||||||||||||  || || ||||||  |||| || ||||| | ||||||||| |||||||||||||| || ||||||||| ||| | ||||||    
T  20838345 ccataaatattttatggaggttaatttagttcgttaagttttttgattaaatttggttcatcaaattaaatacaaagcaaaaagaatgtgaattg 20838439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 30018911 - 30018851
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  30018911 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30018851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 35802382 - 35802491
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | | |  ||||    
T  35802382 gtagcttcaaggataattgcttttggaggatagaagcaatttttaaaagtcaaaccaaacaccattgaaaactcaatttttcacttttgagggttctaga 35802481  T
Q  396 atcacttctt 405  Q
    ||||||||||    
T  35802482 atcacttctt 35802491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 35802180 - 35802288
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||||||||||||||||||| || | || ||||||| |||||||| |||||||||||||||||||||||||||| |||    
T  35802180 ttggtaactcatgaccataaacatttttcgggggctaatttggtttgttaagttttctgattaaattgtgttcatcaaattaattataaagcaaaaagaa 35802279  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  35802280 ggagaattg 35802288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 8416727 - 8416613
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||| |||| |||||||||||||||| ||  |     
T  8416727 gatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaacacgattaaaaattcaatttttcacttttgaaagtt 8416628  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  8416627 gtagaatcacttctt 8416613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 22936603 - 22936717
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||| ||||||  ||||||||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||||||| ||| |     
T  22936603 gatttgtagctttaagaataatttattttggaggatagaatcaattcttaaaagtgaaactaaacaccattaaaaactcagtttttcacttttgaaggtt 22936702  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  22936703 gtagaatcacttctt 22936717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 45276436 - 45276550
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| |||||||||||||||||||||||| || ||||| ||||||||||||| |||||||||| |||| ||| |||||||||||| ||| |     
T  45276436 gatttgtagctttaaggataattgcttttggaggatataatcaatttttaaaagtcaaacaaaacaccattaaaaattcagtttttcacttttgaaggtt 45276535  T
Q  391 gtagaatcacttctt 405  Q
    || ||||||||||||    
T  45276536 gttgaatcacttctt 45276550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 36821462 - 36821571
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacg-ttttctaattaaattttgttcatcaaattaattataaagcaaaagga 216  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||||||| | |||| | ||||||||| ||||||||||||||||| ||||||||| ||    
T  36821462 ttggtaactcataaccattaatatttttcgggggctaatttggttcgctaagtttttttgattaaatttggttcatcaaattaattagaaagcaaaaaga 36821561  T
Q  217 aggagaattg 226  Q
    | ||||||||    
T  36821562 atgagaattg 36821571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 2025775 - 2025667
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||| |||||||||  ||||||||||||  |||| || ||||| | ||||||||| |||||||||||||| || ||||||||| |||    
T  2025775 ttggtaactcatgaccacaaatattttatgggggctaatttagttcgttaagttttatgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 2025676  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  2025675 ggagaattg 2025667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 35164217 - 35164324
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||| |||| |||||||||| || | || ||||||| ||||||||| |||||||||| |||||| ||| ||||| |||    
T  35164217 ttggtaactcatgaccataaacatttatcggaggctaatttggttggttaagttttctgattaaatttggttcatcaaactaattacaaaacaaaaagaa 35164316  T
Q  218 ggagaatt 225  Q
    ||||||||    
T  35164317 ggagaatt 35164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 36821673 - 36821744
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||||||||||||    
T  36821673 aaggataattgcttttggaggatagaagcaattctgaaaagccaaaccaaacaacattgaaaactcaatttt 36821744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 22936406 - 22936514
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| ||| |||||||||||||||| ||||||||||||| |||| ||  |||||||||||||||| |||||||||||| ||||| ||| ||||| ||    
T  22936406 ttggtaagtcacgaccataaatattttt-gggggctaatttggttcgttaacttttctaattaaatttggttcatcaaattaaattacaaaacaaaaaga 22936504  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  22936505 aggagaattg 22936514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 33165850 - 33165764
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||||| ||||| |||| ||||| |||||||||| ||||||||||||| ||||||||||||  || |||||||||||||||||||||    
T  33165850 tagctttaaggagaattacttttagaggatagaaacaattcttaaaagccaaaccaaacactgttaaaaactcaatttttcactttt 33165764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 8416925 - 8416816
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatca-aattaattataaagcaaaagga 216  Q
    ||||||| ||||||||||||| |||||||||| ||||||||| ||||  | ||||||||||||| ||| |||||||| | ||||||| ||||||||| ||    
T  8416925 ttggtaagtcatgaccataaacatttttcgggtgctaatttggttcgtgaagttttctaattaattttggttcatcatatttaattacaaagcaaaaaga 8416826  T
Q  217 aggagaattg 226  Q
    ||||| ||||    
T  8416825 aggagtattg 8416816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 45276241 - 45276347
Alignment:
Q  120 ggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaag 218  Q
    ||||| |||||||| |||| |||||| ||| ||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| | ||    
T  45276241 ggtaagtcatgacc-taaacattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagtag 45276339  T
Q  219 gagaattg 226  Q
    ||||||||    
T  45276340 gagaattg 45276347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 13015940 - 13015833
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||| |||||||||||||||||  | | ||||||||||||| ||  |||| | |||||||||  ||||||||||||| || ||| ||||| |||    
T  13015940 ttggtaactcttgaccataaatatttttttgtg-ctaatttgattcgttaaattttttgattaaatttgattcatcaaattaaatacaaaccaaaaagaa 13015842  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  13015841 agagaattg 13015833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 405
Target Start/End: Complemental strand, 44238889 - 44238802
Alignment:
Q  318 ttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaatcacttctt 405  Q
    |||||||||| || |||||||||||||  |||| |||||||||| |||| |||  ||||||||||| | | | |||||||||||||||    
T  44238889 ttggaggatataatcaattcttaaaagctaaactaaacaccattgaaaattcagcttttcacttttgagggttgtagaatcacttctt 44238802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 35164419 - 35164492
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||||||||| ||||||||||||||||||||||     || ||||| ||||||||||| |||| |||| |||||||    
T  35164419 gtagcttcaaggagaattgcttttggaggatagaag-----ctgaaaagccaaaccaaacaacattgaaaattcaattt 35164492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 924147 - 924086
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaa 371  Q
    |||| ||||||||| |||||||||||| | |||||||||||||||||  ||| |||||||||    
T  924147 aattacttttggagtatagaagcaattttgaaaagtcaaaccaaacatgattgaaaactcaa 924086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 3590331 - 3590251
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaa 200  Q
    ||||||||||||||||||||||| ||||| | |||||||||  |||| ||  |||| | ||||||||| ||||||||||||||    
T  3590331 ttggtaactcatgaccataaata-ttttctgaggctaatttagttcgtta-atttttttattaaatttggttcatcaaattaa 3590251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 629492 - 629552
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  629492 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 629552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 7637432 - 7637384
Alignment:
Q  178 ttaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||||  ||||||||||||| || ||||||||| ||||||||||||    
T  7637432 ttaaatttatttcatcaaattaaatacaaagcaaaatgaaggagaattg 7637384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 30210532 - 30210472
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  30210532 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30210472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 30984369 - 30984429
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  30984369 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 30984429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 41039972 - 41040080
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  41039972 ttggtaactcatgaccataaacatttttcgggggctaatttgatttgctaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 41040071  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  41040072 agagaattg 41040080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 406
Target Start/End: Original strand, 41040169 - 41040284
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | | |     
T  41040169 gatttgtagcttcaaggataattatttttggaggatagaagcaattcttaaaagccaaaccaaacaccattgaaaactcaatttttcacttttgagggtt 41040268  T
Q  391 gtagaatcacttctta 406  Q
    ||||||||||||||||    
T  41040269 gtagaatcacttctta 41040284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 27739384 - 27739498
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||||| | |     
T  27739384 gatttgtagcttcacggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattgaaaattcagcttttcacttttaagggtt 27739483  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  27739484 gtagaatcacttctt 27739498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 31905495 - 31905381
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||| ||| |     
T  31905495 gatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaagtcaaaacaaacaccagtaaaaactcaatttttcacttttgaaggtt 31905396  T
Q  391 gtagaatcacttctt 405  Q
     ||||||||||||||    
T  31905395 ctagaatcacttctt 31905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 37066592 - 37066706
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| || ||||||||||||| ||||||| || ||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |     
T  37066592 gatttgtagctttaatgataattgcttttagaggatataaccaattcttaaaagccaaaccaaacaccattaaaaactcagtttttcacttttaaaggtt 37066691  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  37066692 gtagaatcacttctt 37066706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 41742261 - 41742366
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaa 396  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||||| |||||  |||||    
T  41742261 tagctttaaggacaattgcttttggaggatagaatcaattcttaaaagttaaaccaaacaccattaaaaactcagtttttcacttttgaagattatagaa 41742360  T
Q  397 tcactt 402  Q
    ||||||    
T  41742361 tcactt 41742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 11018265 - 11018373
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||| |||||||||||||||||||| | |||||||||||| ||||||| ||||| | ||||||||| ||||||||||||||||| |||||||||||||    
T  11018265 ttggtagctcatgaccataaatattttacaggggctaatttggttcgctaagttttttgattaaatttggttcatcaaattaattagaaagcaaaaggaa 11018364  T
Q  218 ggagaattg 226  Q
    || ||||||    
T  11018365 ggggaattg 11018373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 41742057 - 41742166
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||    
T  41742057 ttggtaagtcatgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 41742156  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  41742157 aggagaattg 41742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 33229269 - 33229154
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||||| | | |     
T  33229269 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 33229170  T
Q  391 gtagaatcacttctta 406  Q
    |||||||||| |||||    
T  33229169 gtagaatcacgtctta 33229154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 21022665 - 21022779
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||||| | | |     
T  21022665 gatttgtagcttcatggataattgctttaggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 21022764  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  21022765 gtagaatcacttctt 21022779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 39236929 - 39237043
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||||| | | |     
T  39236929 gatttgtagcttcatggataattgtttttggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 39237028  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  39237029 gtagaatcacttctt 39237043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 31905683 - 31905584
Alignment:
Q  128 atgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaattg 226  Q
    |||||||||||||||||| ||| ||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||    
T  31905683 atgaccataaatattttttgggcgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattg 31905584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 7073308 - 7073422
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| |||||||||||||||||| |||||||   |||||||||||| ||||||| |||||||||||||||| |||| ||| |||||||||||| | | |     
T  7073308 gatttgtagcttcaaggataattacttttgggaaatagaagcaatttttaaaagccaaaccaaacaccattaaaaattcagtttttcacttttgagggtt 7073407  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  7073408 gtagaatcacttctt 7073422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 402
Target Start/End: Complemental strand, 21022147 - 21022036
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||| ||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||||| | | |     
T  21022147 gatttgtaacttcatggataattgtttttggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 21022048  T
Q  391 gtagaatcactt 402  Q
    ||||||||||||    
T  21022047 gtagaatcactt 21022036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 10900393 - 10900286
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||| ||||  |||| |||||||| |||| || ||||||| ||||||||| |||||||||||||| || ||||||||| |||    
T  10900393 ttggtaactcatgaccataaatcttttatgggg-ctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 10900295  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  10900294 agagaattg 10900286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 19356566 - 19356451
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactca-atttttcacttttaaagat 389  Q
    |||| |||| || |||||||||||||||| |||||||||| ||| ||||||||| |||||||||||||||| | ||||||  ||||||| |||| ||| |    
T  19356566 gatttgtagttttaaggataattgcttttagaggatagaatcaactcttaaaagccaaaccaaacaccattaagaactcagttttttcatttttgaaggt 19356467  T
Q  390 cgtagaatcacttctt 405  Q
     |||||||||||||||    
T  19356466 tgtagaatcacttctt 19356451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 119 - 226
Target Start/End: Original strand, 8958340 - 8958447
Alignment:
Q  119 tggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaag 218  Q
    |||||| ||||||||||||| |||||  ||||| ||||||| || | || |||| || ||||||||| ||||||||||||||||| ||||||||| |||     
T  8958340 tggtaattcatgaccataaacattttatgggggttaatttggttggttaagtttcctgattaaatttggttcatcaaattaattacaaagcaaaaagaat 8958439  T
Q  219 gagaattg 226  Q
    ||||||||    
T  8958440 gagaattg 8958447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 53705 - 53813
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||||||| | || ||| ||||| ||||||||||| ||| | ||| |    
T  53705 gtagcttcaaccataattgcttttggaggatagaagcaattatgaaaaggcaaaccaaacaactttaaaagctcaa-ttttcacttttcaagtttgtaaa 53803  T
Q  396 atcacttctt 405  Q
    || |||||||    
T  53804 atgacttctt 53813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 8958541 - 8958640
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||| ||||| ||||| |||| |||||||||| ||||||| ||||||||||||||| | |||| ||||||||| ||||||||||| ||| | |||||    
T  8958541 gtagctttaaggagaattgtttttagaggatagaaacaattctgaaaagtcaaaccaaataacattgaaaactcaa-ttttcacttttgaagtttgtaga 8958639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 32872636 - 32872698
Alignment:
Q  312 ttgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||||||||||||||||||||| | |||||||||| |||||| |||| ||||||||||||    
T  32872636 ttgcttttggaggatagaagcaattttaaaaagtcaaatcaaacaacattgaaaactcaattt 32872698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 53526 - 53611
Alignment:
Q  141 tttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||| ||||||||||| |||| || ||||||||||||||||  ||||||||||| ||||| |||||||||  || ||||||||    
T  53526 tttttcgagggctaatttggttcgttaagttttctaattaaattcggttcatcaaatcaattaaaaagcaaaaaaaatgagaattg 53611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 40979669 - 40979573
Alignment:
Q  129 tgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||||||||||||  ||||| ||||||| || | || ||||||| ||||||||| |||||||||||||| || || |||||| ||||||||||||    
T  40979669 tgaccataaatattttatggggg-taatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaggcaaaaagaaggagaattg 40979573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 11018467 - 11018545
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||||||||| |||| |||||||||| ||||||| ||||  ||||||||||| |||| |||| |||||||    
T  11018467 gtagctttaaggataattgttttttgaggatagaaacaattctgaaaaaccaaaccaaacaacattgaaaattcaattt 11018545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 2526330 - 2526265
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    |||||||||||| || ||||||||||||| ||||| |||||||||||  ||  |||||||||||||    
T  2526330 aattgcttttggggggtagaagcaattctgaaaagccaaaccaaacatgatagaaaactcaatttt 2526265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 3260906 - 3260966
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  3260906 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 3260966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 14082951 - 14082891
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  14082951 gtagcttcaactagaattgcttttggaggataaaagctattttaaaaagtcaaaccaaaca 14082891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 42663494 - 42663434
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  42663494 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 42663434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 25256645 - 25256758
Alignment:
Q  118 ttggtaactcatgaccataaatat-----ttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaa 212  Q
    |||||||||||  |||||||||||     ||||| | |||||||||| |||| ||  |||| | ||||||||| |||||||||||||| || ||| ||||    
T  25256645 ttggtaactcacaaccataaatataaatattttctgaggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaa 25256744  T
Q  213 aggaaggagaattg 226  Q
    |  |||||||||||    
T  25256745 aaaaaggagaattg 25256758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 25320436 - 25320549
Alignment:
Q  118 ttggtaactcatgaccataaatat-----ttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaa 212  Q
    |||||||||||  |||||||||||     ||||| | |||||||||| |||| ||  |||| | ||||||||| |||||||||||||| || ||| ||||    
T  25320436 ttggtaactcacaaccataaatataaatattttctgaggctaatttggttcgttatattttttgattaaatttggttcatcaaattaaatacaaaccaaa 25320535  T
Q  213 aggaaggagaattg 226  Q
    |  |||||||||||    
T  25320536 aaaaaggagaattg 25320549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 33387539 - 33387635
Alignment:
Q  121 gtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaag 218  Q
    |||||||||||||||||||||||| | | |||||||||  |||  ||  |||| | ||||||||| |||||||||||||| || ||| ||||| ||||    
T  33387539 gtaactcatgaccataaatatttt-ctgaggctaatttagttcattaatttttttgattaaatttggttcatcaaattaaatacaaaccaaaaagaag 33387635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 29542509 - 29542569
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  29542509 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 29542569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 37640794 - 37640908
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| | | |     
T  37640794 gatttgtagcttcaaggataattgcttttggaggatagaagcaattcttgaaagccaaaccaaacaccattgaaaactcaatttttcatttttgagggtt 37640893  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  37640894 gtagaatcacttctt 37640908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 7473583 - 7473468
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| | | |     
T  7473583 gatttgtagcttcaaggataattgtttttggaggatagaagcaattcttaaaaaccaaaccaaacaccattgaaaactcaatttttcacttttgagggtt 7473484  T
Q  391 gtagaatcacttctta 406  Q
    ||||||| ||||||||    
T  7473483 gtagaatgacttctta 7473468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 291 - 400
Target Start/End: Original strand, 35458218 - 35458327
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| |||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |     
T  35458218 gatttgtagttttaaggataattgcttttggatgatagaatcaattcttaaaagtcaaaccaaacaccattaaaaactcaatttttcacttttgaaggtt 35458317  T
Q  391 gtagaatcac 400  Q
    ||||||||||    
T  35458318 gtagaatcac 35458327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 7473780 - 7473672
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  7473780 ttggtaattcatgaccataaacatttttcgggggctaatttggttcactaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 7473681  T
Q  218 ggagaattg 226  Q
     ||||||||    
T  7473680 agagaattg 7473672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 37640601 - 37640704
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggag 221  Q
    ||||||||||||||||| ||||||| |||| ||||||| |||| || ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||    
T  37640601 taactcatgaccataaacatttttcaggggttaatttggttcgttaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaaggag 37640700  T
Q  222 aatt 225  Q
    ||||    
T  37640701 aatt 37640704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 13892817 - 13892703
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||| |||  ||||||||||| | |||     
T  13892817 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaacaccattgaaaattcagcttttcacttttgaggatt 13892718  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  13892717 gtagaatcacttctt 13892703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 14032942 - 14032828
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||| |||  ||||||||||| | |||     
T  14032942 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaatcaaacaccattgaaaattcagcttttcacttttgaggatt 14032843  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  14032842 gtagaatcacttctt 14032828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 17480879 - 17480765
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| || |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||| |||||||| |||||||||||| ||| |     
T  17480879 gatttgtagctttaaagataattgcttttgaaggatagaatcaattcttaaaagccaaactaaacaccattaaaaactcagtttttcacttttgaaggtt 17480780  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  17480779 gtagaatcacttctt 17480765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 43342112 - 43342221
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| ||||||||||||||||||||| |||||||||||| || | || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||    
T  43342112 ttggtaagtcatgaccataaatatttttcaggggctaatttggtttgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 43342211  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  43342212 aggagaattg 43342221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 406
Target Start/End: Complemental strand, 14033437 - 14033322
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||  ||||||||||| | | |     
T  14033437 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcagcttttcacttttgagggtt 14033338  T
Q  391 gtagaatcacttctta 406  Q
    |||||||||| |||||    
T  14033337 gtagaatcacgtctta 14033322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 44002909 - 44002801
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||  ||||||||||||| || | || ||||||| ||||||||| |||||||||||||| || ||||||||| |||    
T  44002909 ttggtaactcatgaccataaatattttatgggggctaatttggtttgttatgttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 44002810  T
Q  218 ggagaattg 226  Q
    ||| |||||    
T  44002809 ggataattg 44002801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 43342315 - 43342423
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||| | |||||||| | |||||||||| ||| | |||||    
T  43342315 gtagctttaaggataattgcttttggaggatagaatcaattcttaaaaaccaaatcaaacacca-taaaaactcattgtttcacttttgaaggttgtaga 43342413  T
Q  396 atcacttctt 405  Q
    ||||||||||    
T  43342414 atcacttctt 43342423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 35458036 - 35458129
Alignment:
Q  134 ataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaattg 226  Q
    ||||| |||||||||||||||||||| |||| || ||||||||||||||| |  ||||||||||| ||||| ||||||||| ||||||||||||    
T  35458036 ataaacatttttcgggggctaatttggttcgttaagttttctaattaaatatgattcatcaaattaaattacaaagcaaaaagaaggagaattg 35458129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 37996979 - 37996884
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaa 213  Q
    |||||||||||| | |||||| |||||| ||  |||||||||||||| || ||||||  ||||||||| ||||||||||| ||||| |||||||||    
T  37996979 ttggtaactcattatcataaacattttttggaagctaatttgattcgttaagttttccgattaaatttggttcatcaaataaattacaaagcaaaa 37996884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 32497051 - 32497138
Alignment:
Q  123 aactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagca 210  Q
    |||| ||||||||||| ||||||||||   ||||||| |||| || ||||||| |||||||||  |||||||||||||||| ||||||    
T  32497051 aactgatgaccataaacatttttcgggtaataatttggttcgttaagttttctgattaaatttgattcatcaaattaattacaaagca 32497138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 3739086 - 3739163
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||| ||||||||||||| ||||||||||||| | ||||| |||||| |||| |||| ||||||||||||    
T  3739086 gtagctttaaggaaaattgcttttggatgatagaagcaattatgaaaagccaaacc-aacaacattgaaaactcaattt 3739163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 37996778 - 37996700
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||  |||| |||||||||||||||||||||| | ||||| |||||||||||  ||| ||||||||||||    
T  37996778 gtagctttaaggtgaattacttttggaggatagaagcaattatgaaaagccaaaccaaacaatattgaaaactcaattt 37996700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 2443733 - 2443793
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||| | ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  2443733 gtagctttatggagaattgtttttggaggatagaagcaattctgaaaagccaaaccaaaca 2443793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 17481050 - 17481009
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttg 159  Q
    ||||||| |||||| |||||||||||||||||||||||||||    
T  17481050 ttggtaagtcatgatcataaatatttttcgggggctaatttg 17481009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 14379798 - 14379738
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  14379798 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 14379738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 31686855 - 31686915
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  31686855 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31686915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 31786837 - 31786777
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  31786837 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 31786777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 40254482 - 40254422
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  40254482 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 40254422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 44282632 - 44282572
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  44282632 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 44282572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 37757 - 37648
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| | |||||    
T  37757 gtagcttaaaggataattgtttttggaggatagaatcaattcttaaaagccaaaccaaacaccattaaaaactcaatttttcacttttgaaggttgtaga 37658  T
Q  396 atcacttctt 405  Q
    ||||||||||    
T  37657 atcacttctt 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 37958 - 37849
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| || | |||||||| ||||||||| |||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||| ||||| ||    
T  37958 ttggtaagtcgttaccataaacatttttcggaggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaaacaaaaaga 37859  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  37858 aggagaattg 37849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 35604874 - 35604765
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtaga 395  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| | | | |||||    
T  35604874 gtagcttcaaggataattgtttttggaggatagaagcaattcttaaaagtcaaatcaaacaccattgaaaactcagtttttcacttttgagggttgtaga 35604775  T
Q  396 atcacttctt 405  Q
    ||||||||||    
T  35604774 atcacttctt 35604765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 46406486 - 46406372
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||| ||||||||||| ||| |     
T  46406486 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaacaccattgaaaattcaacttttcacttttgaaggtt 46406387  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  46406386 gtagaatcacttctt 46406372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 291 - 403
Target Start/End: Complemental strand, 6706197 - 6706085
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||| |||| ||||||||||||||||||||||     
T  6706197 gatttgtagctttaaggataattgtttttggaggatagaatcaattcttaaaagccaaactaaacaccattaaaaattcaatttttcacttttaaagatt 6706098  T
Q  391 gtagaatcacttc 403  Q
    ||||||| |||||    
T  6706097 gtagaattacttc 6706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 47655723 - 47655832
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||    
T  47655723 ttggtaagtcatgaccataaatatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaaga 47655822  T
Q  217 aggagaattg 226  Q
    | ||||||||    
T  47655823 aagagaattg 47655832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 297 - 405
Target Start/End: Original strand, 13509979 - 13510087
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaa 396  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| |||||||||||| ||| | ||||||    
T  13509979 tagctttaaggataattgcttttggaggatagaatcaattcttaaaagctaaaccaaacaccattaaaaactcagtttttcacttttgaaggttgtagaa 13510078  T
Q  397 tcacttctt 405  Q
    ||| |||||    
T  13510079 tcatttctt 13510087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 4485020 - 4485115
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaa 213  Q
    ||||||| |||||||||||||||||||||||||||||||| | |||| || ||||||||||||||||| ||||||||||||||||| |||||||||    
T  4485020 ttggtaaatcatgaccataaatatttttcgggggctaattagtttcgttaagttttctaattaaatttggttcatcaaattaattacaaagcaaaa 4485115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 44740407 - 44740299
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||| || ||||||| ||||||||| ||||||||| ||||||| ||||||||  |||    
T  44740407 ttggtaactcatgacaataaatatttttcggaggctaatttggttcgttaagttttctgattaaatttggttcatcaagttaattacaaagcaaacagaa 44740308  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  44740307 ggagaattg 44740299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 50030896 - 50030791
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaa 396  Q
    |||||| || |||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| |||| ||| |||||||||||||||||| ||| ||    
T  50030896 tagctttaaagataattgtttttggaggatagaatcaattcttaaaacccaaaccaaacaccattgaaaattcagtttttcacttttaaagattgtataa 50030797  T
Q  397 tcactt 402  Q
    ||||||    
T  50030796 tcactt 50030791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 46033513 - 46033621
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||  ||||||||||| ||||||||||||| || | |  ||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  46033513 ttggtaactcatgacagtaaatattttttgggggctaatttggtttgttgagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 46033612  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  46033613 ggagaattg 46033621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 405
Target Start/End: Original strand, 47655921 - 47656035
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| |||||||| ||  |||||||| | | |     
T  47655921 gatttgtagctttaaggataattgcttttggaggatagaatcaattcttaaaagccaaaccaaacatcattaaaaactcagttagtcacttttgagggtt 47656020  T
Q  391 gtagaatcacttctt 405  Q
    ||| |||||||||||    
T  47656021 gtataatcacttctt 47656035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 41512406 - 41512298
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||| |||||||||||||  ||||||||||||| |||| || ||||||| ||||||||| |||||||||| ||| || ||| ||||| |||    
T  41512406 ttggtaactcatggccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaactaaatacaaaacaaaaagaa 41512307  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  41512306 ggagaattg 41512298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 6706392 - 6706310
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaa 200  Q
    ||||||| ||||||||||||| ||||||||| |||||||||| |||| || ||||||||||||||||| ||||||||||||||    
T  6706392 ttggtaagtcatgaccataaacatttttcggaggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaa 6706310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 42137537 - 42137645
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||  ||||| ||| ||| |||| || ||||||| ||||||||| ||| |||| ||||| || ||||||||| |||    
T  42137537 ttggtaactcatgaccataaatattttatgggggttaagttggttcgttaagttttctgattaaatttggtttatcagattaaatacaaagcaaaaagaa 42137636  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  42137637 ggagaattg 42137645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 118 - 220
Target Start/End: Original strand, 13509776 - 13509879
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| |  ||||| ||||||||||| ||||||||| || ||||| ||||||||| ||    
T  13509776 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttcagttttgtaattaaatttggttcatcaagttaaattacaaagcaaaaaga 13509875  T
Q  217 agga 220  Q
    ||||    
T  13509876 agga 13509879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 11829123 - 11829058
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||  ||| |||||||||||||    
T  11829123 aattgcttttggaggatagaagcaattcttaaaaggcaaaccaaacatgattgaaaactcaatttt 11829058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 11050936 - 11051030
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaa 212  Q
    |||||||||||| ||||||||||||||||| ||||||||||||| |  ||  |||| | | ||||||| ||||||||||||||||| ||||||||    
T  11050936 ttggtaactcattaccataaatatttttcgagggctaatttgatccattaatttttttgaataaatttggttcatcaaattaattacaaagcaaa 11051030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 50031092 - 50030982
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggg-gctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagg 215  Q
    ||||||| ||||||||||||| ||||||  ||  ||||||||| |||| || |||||||||||||||||  ||||||||||| ||||| ||||||||| |    
T  50031092 ttggtaagtcatgaccataaacatttttttggacgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaag 50030993  T
Q  216 aaggagaattg 226  Q
    |||||||||||    
T  50030992 aaggagaattg 50030982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 49430894 - 49430789
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||| |||||||||||||||||||||||| | |||  |||| |||| || ||||| | ||||||||| |||||| |||||||||| ||||||||| |||    
T  49430894 ttggtgactcatgaccataaatatttttcgagagctggtttggttcgttaagttttttgattaaatttggttcattaaattaattacaaagcaaaaagaa 49430795  T
Q  218 ggagaa 223  Q
    | ||||    
T  49430794 gaagaa 49430789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 27416794 - 27416718
Alignment:
Q  150 ggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    |||||||||| |||| ||  |||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  27416794 ggctaatttggttcgttaaattttctgattaaatttggttcatcaaattaattacaaagcaaaaagaaggagaattg 27416718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 308 - 375
Target Start/End: Original strand, 11051212 - 11051279
Alignment:
Q  308 ataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||||||  ||| |||||||||||||    
T  11051212 ataattgtttttggaggatagaagcaattttgaaaagtcaaaccaaacatgattgaaaactcaatttt 11051279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 24075766 - 24075676
Alignment:
Q  136 aaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    |||||||||  || |||||||||| |||| || ||||||| ||||||||| |||||||||||||| || ||||||||| |||  |||||||    
T  24075766 aaatattttatggaggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaaatagaattg 24075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 27576019 - 27575973
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  27576019 aattgcttttggaggatagaagcaattatgaaaagtcaaaccaaaca 27575973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 44740182 - 44740119
Alignment:
Q  319 tggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcactttt 383  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||  ||||||||| ||||||||||    
T  44740182 tggaagatagaaacaattcttaaaaggcaaaccaaacaccatt-gaaactcaatctttcactttt 44740119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 46033723 - 46033799
Alignment:
Q  300 cttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattttt 376  Q
    |||||| || ||||| ||||| ||||||||||||||| | |||||||||| ||||||  ||| ||||||||||||||    
T  46033723 cttcaatgagaattgtttttgaaggatagaagcaattttgaaaagtcaaatcaaacatgattgaaaactcaattttt 46033799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 350
Target Start/End: Complemental strand, 7385290 - 7385231
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaac 350  Q
    |||| ||||||| || |||||||||||||| |||||||||  ||||||||||||||||||    
T  7385290 gatttgtagctttaaagataattgcttttgaaggatagaattaattcttaaaagtcaaac 7385231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 1762478 - 1762372
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||| |||||||||| || || |||||||| |||| ||  |||| | ||  ||||| |||||||||||||| || ||| ||||| |||    
T  1762478 ttggtaactcatgacc-taaatattttccgagg-ctaatttggttcgttaaattttttgatacaatttggttcatcaaattaaatacaaaccaaaaagaa 1762381  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  1762380 ggagaattg 1762372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 27067396 - 27067289
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||| ||||||||||||| |||  ||   |||||||||||| ||  |||| | ||||||||| |||||||||||||| || ||| ||||  |||    
T  27067396 ttggtaactcctgaccataaatatcttttaggtt-taatttgattcgttaattttttttattaaatttggttcatcaaattaaatacaaatcaaagagaa 27067298  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  27067297 ggagaattg 27067289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 51488563 - 51488623
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | |||||||||||||||||    
T  51488563 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagtcaaaccaaaca 51488623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 4485229 - 4485299
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||| ||||| ||||||||||||||| ||| ||| ||| ||| |||||||||  ||| ||||||||||||    
T  4485229 aaggagaattgtttttggaggatagaatcaactctaaaatgtctaaccaaacaatattgaaaactcaattt 4485299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 7385427 - 7385369
Alignment:
Q  169 gttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaattg 226  Q
    |||||||||||||||||  ||||||||||| ||||| |||| |||| ||||||||||||    
T  7385427 gttttctaattaaatttgattcatcaaattaaattacaaagtaaaaagaaggagaattg 7385369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 5271571 - 5271631
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  5271571 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 5271631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 7593271 - 7593331
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  7593271 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 7593331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 15353366 - 15353306
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  15353366 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 15353306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 26821520 - 26821460
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  26821520 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 26821460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 36496119 - 36496179
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  36496119 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 36496179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 38627676 - 38627616
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  38627676 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 38627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 38843289 - 38843229
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  38843289 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 38843229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 50979303 - 50979363
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  50979303 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 50979363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 32898 - 33006
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| || ||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  32898 ttggtaactcatgaccataaatatttttcgggggctgatttggttcgttaggttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 32997  T
Q  218 ggagaattg 226  Q
    ||| |||||    
T  32998 ggataattg 33006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 398
Target Start/End: Original strand, 33107 - 33202
Alignment:
Q  304 aaggataattgctttt-ggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaatc 398  Q
    |||||||||||||||| |||| |||||||||||| ||||||||||||| ||| | |||| |||||||||||||||| |||| | ||| ||||||||    
T  33107 aaggataattgctttttggagaatagaagcaatttttaaaagtcaaactaaatatcattgaaaactcaatttttcatttttgaggattgtagaatc 33202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 45150860 - 45150752
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||  || ||||||| ||||||||||||||||||||||||||| ||||||||| |||    
T  45150860 ttggtaattcatgaccataaacatttttcgggggctaatttggttcattaagttttctgattaaattttgttcatcaaattaattacaaagcaaaaagaa 45150761  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  45150760 ggagaattg 45150752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 402
Target Start/End: Original strand, 48254537 - 48254648
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||| |     
T  48254537 gatttgtagctttaaggataattgcttttggaggatataatcaattcttaaaagtcaaaccaaacaccattaaaagctcagtttttcacttttgaaggtt 48254636  T
Q  391 gtagaatcactt 402  Q
    ||||||||||||    
T  48254637 gtagaatcactt 48254648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 45150663 - 45150549
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||| |||| | | |     
T  45150663 gatttgtagcttcaaggataattgtttttggaggatagaaacaattcttaaaagccaaaccaaacaccattgaaaactcaatttttcatttttgagggtt 45150564  T
Q  391 gtagaatcacttctt 405  Q
     ||||||||||||||    
T  45150563 atagaatcacttctt 45150549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 28182632 - 28182527
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||| || || |||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  28182632 ttggcaactcatgaccataaatatttttcgggggctaatttggttcgttaagtcttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 28182533  T
Q  218 ggagaa 223  Q
    ||||||    
T  28182532 ggagaa 28182527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 30810970 - 30810862
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||| || ||||||| ||||||||| |||||||||||||| || ||||||||| |||    
T  30810970 ttggtaactcatgaccataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaagcaaaaagaa 30810871  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  30810870 ggagaattg 30810862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 39251541 - 39251427
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||| | ||||||||| |||||||||||| || |||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| |     
T  39251541 gatttgtagctttagggataattgtttttggaggatataatcaattcttaaaagtcaaatcaaacaccattaaaaattcagtttttcacttttaaaggtt 39251442  T
Q  391 gtagaatcacttctt 405  Q
    |||||||||||||||    
T  39251441 gtagaatcacttctt 39251427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 11263949 - 11263845
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggag 221  Q
    ||||||||||||||||| |||||||| ||||||||||| |||  || ||||||| ||| ||||||||||||||||||||||| ||||||||| |||||||    
T  11263949 taactcatgaccataaacatttttcgagggctaatttggttcattaagttttctgattgaattttgttcatcaaattaattacaaagcaaaaagaaggag 11263850  T
Q  222 aattg 226  Q
    |||||    
T  11263849 aattg 11263845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 39251739 - 39251630
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaagga 216  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||| |||||  || ||||| ||    
T  39251739 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattaccaaccaaaaaga 39251640  T
Q  217 aggagaattg 226  Q
    ||||||||||    
T  39251639 aggagaattg 39251630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 42274779 - 42274671
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||| ||||| |||||||||||||||||||| |||| || ||||||| || |||||| ||||||||||||||||| |||| |||| |||    
T  42274779 ttggtaactcatgactataaacatttttcgggggctaatttggttcgataagttttctgatcaaatttggttcatcaaattaattacaaaggaaaaagaa 42274680  T
Q  218 ggagaattg 226  Q
    ||| |||||    
T  42274679 ggaaaattg 42274671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 291 - 405
Target Start/End: Complemental strand, 31813466 - 31813352
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatc 390  Q
    |||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||| |||| |||  ||||||||||| | | |     
T  31813466 gatttgtagcttcatggataattgcttttggaggatagaatcaattcttaaaagccaaactaaacaccattgaaaattcagcttttcacttttgagggtt 31813367  T
Q  391 gtagaatcacttctt 405  Q
     ||||||||||||||    
T  31813366 atagaatcacttctt 31813352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 48181332 - 48181224
Alignment:
Q  118 ttggtaactcatgaccataaatattttt-cgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaagga 216  Q
    ||||||||||||||||||||| |||||| ||||||||||||||  ||| || ||||||| ||||||||| |||||| |||||||||| ||||||||| ||    
T  48181332 ttggtaactcatgaccataaacattttttcgggggctaatttggctcgttaagttttctgattaaatttggttcatgaaattaattacaaagcaaaaaga 48181233  T
Q  217 aggagaatt 225  Q
    || ||||||    
T  48181232 agaagaatt 48181224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 42074650 - 42074546
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||    | ||||||| ||||||||| ||||||||||||||||| ||||||||| |||    
T  42074650 ttggtaactcatgaccataaacatttttcgggggctagcttggtt----aagttttctgattaaatttggttcatcaaattaattacaaagcaaaaagaa 42074555  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  42074554 ggagaattg 42074546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 28182429 - 28182352
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||    
T  28182429 tagctttaaggataattgctgttggaggatagaagcaattctaaaaagccaaaccaaacaacattgaaaactcaattt 28182352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 50392657 - 50392761
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||| ||||||||||||||  ||||||||||||| |||| || ||||||| ||||||||| |||||||||||||| || ||| ||||| |||    
T  50392657 ttggtaactcat-accataaatattttatgggggctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaatacaaaacaaaaagaa 50392755  T
Q  218 ggagaa 223  Q
    ||||||    
T  50392756 ggagaa 50392761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 226
Target Start/End: Complemental strand, 51229985 - 51229881
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggag 221  Q
    ||||||||||| |||||  ||||||||||||||||||| |  | || ||||||| |||||||||  |||||||||||||||| ||||||||| |||||||    
T  51229985 taactcatgacgataaacttttttcgggggctaatttggtcggttaagttttcttattaaatttgattcatcaaattaattacaaagcaaaaagaaggag 51229886  T
Q  222 aattg 226  Q
    |||||    
T  51229885 aattg 51229881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 374
Target Start/End: Original strand, 33025836 - 33025914
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||| | ||||||||||    
T  33025836 gtagctttaaggagaattgcttttggaggatagaagcaattttgaaaagtcaaaccaaacaacattgataactcaattt 33025914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 42074452 - 42074374
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||||||    
T  42074452 gtagctttaaggagaattgtttttggaggatagaagcaattctgaaaagccaaaccaaacagcattgaaaactcaattt 42074374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 48254347 - 48254448
Alignment:
Q  126 tcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaatt-aattataaagcaaaaggaaggagaat 224  Q
    ||||||||||||| |||||||  |||||||||| ||||  || ||||||||||||||||| |||||||||||| ||||| ||||||||| ||| ||||||    
T  48254347 tcatgaccataaacatttttcaagggctaatttaattccttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaat 48254446  T
Q  225 tg 226  Q
    ||    
T  48254447 tg 48254448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 53687217 - 53687321
Alignment:
Q  122 taactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggag 221  Q
    |||||||||| |||||| |||||| || |||||||||| || | || ||||||| ||| ||||| | ||||||||||||||| ||||||||| |||||||    
T  53687217 taactcatgatcataaacattttttggaggctaatttggttggttaagttttcttatttaatttggctcatcaaattaattacaaagcaaaatgaaggag 53687316  T
Q  222 aattg 226  Q
    |||||    
T  53687317 aattg 53687321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 334 - 405
Target Start/End: Complemental strand, 11257847 - 11257776
Alignment:
Q  334 attcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaatcacttctt 405  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||| |  || |||||||||||||||    
T  11257847 attcttaaaagccaaaccaaacaccattgaaaactcaatttttcacttttgataattgtagaatcacttctt 11257776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 51407524 - 51407445
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttt 375  Q
    ||||||||||  | ||||||||||||||||||||||||||||| ||||| ||||||||||| | || |||||||||||||    
T  51407524 gtagcttcaaccaaaattgcttttggaggatagaagcaattctgaaaagccaaaccaaacaactttaaaaactcaatttt 51407445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 51407701 - 51407618
Alignment:
Q  143 tttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||||||||||||| |||| ||  |||||| ||||||||  ||||||||||||||||| ||||||||| ||||||||||||    
T  51407701 tttcgggggctaatttgtttcgttaaattttctgattaaattcggttcatcaaattaattacaaagcaaaaagaaggagaattg 51407618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 42274570 - 42274500
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||| |||||| |||||||||||||||||    
T  42274570 aaggagaattgcttttggaggatagaatcaattctaaaaagccaaatcaaacaacattcaaaactcaattt 42274500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 48181121 - 48181051
Alignment:
Q  304 aaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||| | |||| ||||||||||||    
T  48181121 aaggagaattgcttttggaggatagaagcaattctaaaatgtcaaaccaaaaaacattgaaaactcaattt 48181051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 374
Target Start/End: Original strand, 53687429 - 53687493
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||  ||| ||||||||||||    
T  53687429 aattgcttttggaggatagaagcaattatgaaaagtcaaaccaaacaatattgaaaactcaattt 53687493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 336
Target Start/End: Complemental strand, 11263756 - 11263711
Alignment:
Q  291 gattggtagcttcaaggataattgcttttggaggatagaagcaatt 336  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  11263756 gatttgtagcttcaaggataattgcttttggaggatagaagcaatt 11263711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 374
Target Start/End: Complemental strand, 51229787 - 51229709
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||| ||||| ||||  ||||||||||||||||||||| | |||||  |||||||||| |||| ||||||||||||    
T  51229787 gtagctttaaggagaattatttttggaggatagaagcaattttgaaaagctaaaccaaacaacattgaaaactcaattt 51229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 33025685 - 33025742
Alignment:
Q  169 gttttctaattaaattttgttcatcaaattaattataaagcaaaaggaaggagaattg 226  Q
    ||||||| ||||||||| ||||||| ||||||||| ||||||||| ||||||||||||    
T  33025685 gttttctgattaaatttggttcatcgaattaattacaaagcaaaaagaaggagaattg 33025742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 197
Target Start/End: Original strand, 45488944 - 45489023
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaat 197  Q
    |||||||||||| ||||||||||||||  || || ||||||| |||| ||  ||||||| |||||||| |||||||||||    
T  45488944 ttggtaactcataaccataaatattttctggaggttaatttggttcgttaaattttctagttaaatttggttcatcaaat 45489023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 44328914 - 44328806
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctac-gttttctaattaaattttgttcatcaaattaattataaagcaaaagga 216  Q
    |||||||||| |||||||||||||||||   ||||||||||| |||| |||  |||| | ||||||||| ||| |||||||||| || ||| ||||| ||    
T  44328914 ttggtaactcctgaccataaatattttt-ttgggctaatttggttcgttactttttttttattaaatttggtttatcaaattaaatacaaaccaaaaaga 44328816  T
Q  217 aggagaattg 226  Q
    | ||||||||    
T  44328815 atgagaattg 44328806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 52692065 - 52692005
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| || | ||| |||||||||||||||||||    
T  52692065 gtagcttcaactagaattgcttttggaggataaaatctatttttaaaagtcaaaccaaaca 52692005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 44610664 - 44610769
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    |||||||||||| ||||||||||||||  || | ||||||||||||| ||  |||| | ||||||||| |||||||||||||| || ||| | ||| |||    
T  44610664 ttggtaactcat-accataaatattttatggag-ctaatttgattcgttagatttt-tgattaaatttggttcatcaaattaaatacaaatcgaaaagaa 44610760  T
Q  218 ggagaattg 226  Q
    |||| ||||    
T  44610761 ggagcattg 44610769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 47141469 - 47141529
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  47141469 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 47141529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 47697137 - 47697077
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  47697137 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaaggcaaaccaaaca 47697077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 51129082 - 51129142
Alignment:
Q  296 gtagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaaca 356  Q
    ||||||||||  | |||||||||||||||||| |||| ||| | ||||| |||||||||||    
T  51129082 gtagcttcaactagaattgcttttggaggataaaagctattttgaaaagccaaaccaaaca 51129142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 4350 - 4268
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaa 200  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||||||    
T  4350 ttggtaagtcatgaccataaacatttttcgggggctaatttggttcgttaagttttctaattaaatttggttcatcaaattaa 4268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 4149 - 4047
Alignment:
Q  297 tagcttcaaggataattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaatttttcacttttaaagatcgtagaa 396  Q
    |||||| || ||||||||||||| |||||||||| ||||||||||||| ||||| |||||||||| |||| ||| |||||||||||| ||| | ||||||    
T  4149 tagctttaatgataattgcttttcgaggatagaatcaattcttaaaagccaaactaaacaccattaaaaattcagtttttcacttttgaaggttgtagaa 4050  T
Q  397 tca 399  Q
    |||    
T  4049 tca 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 17073 - 16965
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||||||||||||||||| | ||||  |||||||||||| |||| || |||| |||| ||||||| ||||||||||||||||| || |||||| |||    
T  17073 ttggtaactcatgaccataaacactttttcggggctaatttggttcgttaagtttcctaaataaatttggttcatcaaattaattacaacgcaaaaagaa 16974  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  16973 ggagaattg 16965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 16861 - 16797
Alignment:
Q  310 aattgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||||||| |||| ||||||||||||    
T  16861 aattgcttttggaggatagaatcaattctaaaaagccaaaccaaacaacattgaaaactcaattt 16797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 91798 - 91690
Alignment:
Q  118 ttggtaactcatgaccataaatatttttcgggggctaatttgattcgctacgttttctaattaaattttgttcatcaaattaattataaagcaaaaggaa 217  Q
    ||||||| ||||||||||||| | ||||  |||||| ||||| |||| ||  |||||| | ||||||| ||||||||||||||||| ||||||||| |||    
T  91798 ttggtaattcatgaccataaacactttttcggggctgatttggttcgttaaattttctgaataaatttggttcatcaaattaattacaaagcaaaaagaa 91699  T
Q  218 ggagaattg 226  Q
    |||||||||    
T  91698 ggagaattg 91690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 91579 - 91516
Alignment:
Q  311 attgcttttggaggatagaagcaattcttaaaagtcaaaccaaacaccattcaaaactcaattt 374  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||||  |||| ||||||||||||    
T  91579 attgcttttggaggatagaatcaattctaaaaagccaaaccaaactacattgaaaactcaattt 91516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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