View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_17 (Length: 405)
Name: NF13096_low_17
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 47333331 - 47333731
Alignment:
| Q |
1 |
tgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgtt |
100 |
Q |
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| T |
47333331 |
tgctccaagtttggatattattggttgtcctaagatattgatttttgttgctgggaatgatgatttaagagacagagggatttggtactatgatgctgtt |
47333430 |
T |
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| Q |
101 |
aagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagaattctattgata |
200 |
Q |
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| T |
47333431 |
aagaaaagtggttggaaaggtgatgtggaacttgttcatgttgaaggtgaagaacattgttttcagatttatcatcctgaaactcagagttctattgata |
47333530 |
T |
|
| Q |
201 |
tggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaat |
300 |
Q |
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| T |
47333531 |
tggtcaaacgtattgcttcttttcttgtttgatttgaagagggtcattaggtaattttattgttgatttttgtaataaattggagatggggttgctgaat |
47333630 |
T |
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| Q |
301 |
tcatgatcaattttaattatcctgttttgtttat---ggatattcaattcaatgaa--tcatatttttcttttatactgcaatcacgacaatcatgatat |
395 |
Q |
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| T |
47333631 |
tcatgatcaattttaattatcctgttttgtttatatgggatattcaattcaatgaatttcatatttgtcttttatactgcaatcacgacaatcatgatat |
47333730 |
T |
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| Q |
396 |
t |
396 |
Q |
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| T |
47333731 |
t |
47333731 |
T |
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