View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_18 (Length: 375)
Name: NF13096_low_18
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 365
Target Start/End: Complemental strand, 28270081 - 28269736
Alignment:
| Q |
20 |
ggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggcacacaaagacaaaacttgtcattcactctttcttgggatccct |
119 |
Q |
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| T |
28270081 |
ggcagtacttatcattctgagatgctgaaaattagtgactgttgcagaaggcaaggcacacaaagacaaaacttgtcattcactctttcttgggatccct |
28269982 |
T |
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| Q |
120 |
tgcaagatagagggaagagagagggtgataagggatcttaatttggtgcagtatgtaatcaatctcggccattgatttgaaatcggacgatttagattac |
219 |
Q |
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| T |
28269981 |
tgcaagatagagggaagagagagggtgagaagggatcttaatttggtgcagtatgtaatcaatctcggccattgatttgaaatcggacgatttagattac |
28269882 |
T |
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| Q |
220 |
tcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattggtaactgtgtgccataattattgtagggaatctgtttcggatg |
319 |
Q |
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| T |
28269881 |
tcattcactatataaaaaatgatctgaccattggtttagattgaagggtcaagattagtaactgtgtgccataattattgtagggaatctgtttcggatg |
28269782 |
T |
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| Q |
320 |
cgaagccagtttattagatgaccttaaatgtttctgttctcctatg |
365 |
Q |
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| T |
28269781 |
cgaagccagtttattagatgaccttaaatgtttctgctctcctatg |
28269736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 6041595 - 6041640
Alignment:
| Q |
174 |
gtaatcaatctcggccattgatttgaaatcggacgatttagattac |
219 |
Q |
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| T |
6041595 |
gtaatcaatctcggccattgatttaaaattgaacgaattagattac |
6041640 |
T |
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