View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_19 (Length: 372)

Name: NF13096_low_19
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_19
NF13096_low_19
[»] chr8 (9 HSPs)
chr8 (10-355)||(15813690-15814037)
chr8 (27-258)||(15697841-15698072)
chr8 (32-252)||(15712271-15712491)
chr8 (21-355)||(15800263-15800594)
chr8 (32-259)||(15722873-15723100)
chr8 (41-254)||(15704242-15704455)
chr8 (32-252)||(15805838-15806058)
chr8 (134-252)||(15792174-15792292)
chr8 (33-217)||(15693434-15693618)
[»] chr3 (4 HSPs)
chr3 (32-196)||(3080060-3080224)
chr3 (32-196)||(3093936-3094100)
chr3 (57-254)||(3120871-3121068)
chr3 (57-194)||(4549221-4549358)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 15813690 - 15814037
Alignment:
Q  10 aagaaaatgggaaggtttgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaa 109  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813690 aagaaaatgggaaggtttgtctaaacatactgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaa 15813789  T
Q  110 gcagcaacctaagagcttcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaa 209  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813790 gcagcaacctaagagtttcacaaggtttctatgttgaagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaa 15813889  T
Q  210 agccttttggctgcaatttcggtcccatctggtaaagtaccctaacaaaattgaatgaaaacagaataggaacatgtcaaacttatacggcaaaac--ta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  15813890 agccttttggctgcaatttcggtcccatctggtaaagtaccctaacaaaattgaacgaaaacagaataggaacatgtcaaacttatacggcaaaactata 15813989  T
Q  308 taaatgcatttcttgacttctagatccaattaattaataccttgtaaa 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15813990 taaatgcatttcttgacttctagatccaattaattaataccttgtaaa 15814037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 15697841 - 15698072
Alignment:
Q  27 tgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagct 126  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||| |||||| ||||||||| |||||      
T  15697841 tgtcaaaacataccgaaaaggtgaaagtcaaggcttgaattcggcatgtattcatatactagtatcttttcatttccttcaatgcagcaacccaagagtc 15697940  T
Q  127 tcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaat 226  Q
    |||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| |||||||||| |||||||    
T  15697941 tcacgaggtttctgtgttgcagtttagctatgaaaattacttcattcttgaactcctctgaaccttgacccgacgtttctgcaagccttttgactgcaat 15698040  T
Q  227 ttcggtcccatctggtaaagtaccctaacaaa 258  Q
    ||| ||||||||||||||||||||||||||||    
T  15698041 ttctgtcccatctggtaaagtaccctaacaaa 15698072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 15712271 - 15712491
Alignment:
Q  32 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 131  Q
    |||||||| ||||||||||||||  |||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||| ||||| ||||| |||||     
T  15712271 aaacatactgaaaaggtgaaagtcgaggcttgaattttgcatgtactcgtatactagtatcttttcattttgttcaaagcaacaacccaagagtttcacg 15712370  T
Q  132 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcgg 231  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |    
T  15712371 aggtttctatgttgtagttttgctatgaaaatcacttcattcttgaactcctctaaaccttgacctgatgtttctgaaagccttttggccgcaatttctg 15712470  T
Q  232 tcccatctggtaaagtaccct 252  Q
    ||||||| |||||||||||||    
T  15712471 tcccatccggtaaagtaccct 15712491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 15800263 - 15800594
Alignment:
Q  21 aaggtttgtctaaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaaccta 120  Q
    ||||||||| ||| ||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| | | |||| |||| |||| |    
T  15800263 aaggtttgtttaagcatactgaaaaggtgaaagtcaaggcttgaattcggcatgtactcatatactagtattttttcatctccctcaatgcagtaaccca 15800362  T
Q  121 agagcttcacaaggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggc 220  Q
    |||| ||  |||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||| |||||||||  |||||||| |||||||||||| |    
T  15800363 agagttttgcaaggtttctatgttgcagtttagctatgaatattacttcattcttgaactcctctgaaccttgactcgacgtttccgaaagccttttgac 15800462  T
Q  221 tgcaatttcggtcccatctggtaaagtaccctaacaaaattgaatgaaaacagaataggaacatgtcaaacttatacggcaaaactataaatgcatttct 320  Q
     |||| |||  | ||||||||||||||||||| | | || |||| ||||| |||| | ||||  |||||| |||||  ||||||||| | ||| ||||||    
T  15800463 agcaacttctctgccatctggtaaagtaccctgatataaatgaaggaaaatagaaaacgaacgagtcaaagttataaagcaaaactacagatgaatttct 15800562  T
Q  321 tgacttctagatccaattaattaataccttgtaaa 355  Q
    || |||||||||   ||| ||| ||||||||||||    
T  15800563 tggcttctagat---atttattcataccttgtaaa 15800594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 32 - 259
Target Start/End: Original strand, 15722873 - 15723100
Alignment:
Q  32 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 131  Q
    |||| ||| |||||| ||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||    
T  15722873 aaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattttcttcaatgcagcaacctaatagcttcaca 15722972  T
Q  132 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcgg 231  Q
    ||||| || ||||| | ||| |||||||| |||||||||||||||||||||||||||||||||   || | ||||| |||||||||  | |||||||| |    
T  15722973 aggttcctgtgttgcaatttagctatgaatattacttcattcttaaactcctctaaaccttgattagatgcttctgcaagcctttttaccgcaatttctg 15723072  T
Q  232 tcccatctggtaaagtaccctaacaaaa 259  Q
    |||| |||||||||||||||| ||||||    
T  15723073 tcccgtctggtaaagtaccctgacaaaa 15723100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 41 - 254
Target Start/End: Original strand, 15704242 - 15704455
Alignment:
Q  41 gaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttcta 140  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||  |||| |||| ||||||||||||||| ||||| ||||||||     
T  15704242 gaaaaggtgaaagtcaaggcttgaatttggcttatagtcatatactagtatcttttcgctttcctcaatgcagcaacctaagagtttcacgaggtttctg 15704341  T
Q  141 tgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcggtcccatctg 240  Q
    ||||  ||||| ||||| || |||||||||||||| || ||||||  ||||||| | |||||||||| |||||||||  | |||||||| || |||||||    
T  15704342 tgtttcagtttagctataaagattacttcattcttgaattcctctgcaccttgatcagacgtttctgcaagcctttttaccgcaatttctgttccatctg 15704441  T
Q  241 gtaaagtaccctaa 254  Q
     ||| |||||||||    
T  15704442 ctaaggtaccctaa 15704455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 32 - 252
Target Start/End: Original strand, 15805838 - 15806058
Alignment:
Q  32 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 131  Q
    |||||||||||||||||||||||  |||||||||||| |||  || |||||||| ||||| ||||||||||| || | |||||| || ||||| |||||     
T  15805838 aaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcacg 15805937  T
Q  132 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcgg 231  Q
    |||||||  ||||| || || |||||||| ||||||||||| |  ||||||||| |||||||||| ||| | |||| |||||||||  | |||| ||| |    
T  15805938 aggtttcggtgttgcagattggctatgaagattacttcattttcgaactcctctgaaccttgaccagacatctctgcaagccttttcacagcaacttctg 15806037  T
Q  232 tcccatctggtaaagtaccct 252  Q
    | |||||||||||||||||||    
T  15806038 tgccatctggtaaagtaccct 15806058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 134 - 252
Target Start/End: Original strand, 15792174 - 15792292
Alignment:
Q  134 gtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcggtc 233  Q
    |||||| ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||| | |||| | |||||||| | |||| ||| ||     
T  15792174 gtttctgtgttgcagtttagctatgaagattacttcattcttgaactcctctaaaccttgacctgacatctctgcatgccttttgacagcaacttctgtg 15792273  T
Q  234 ccatctggtaaagtaccct 252  Q
    |||| ||||||||||||||    
T  15792274 ccatttggtaaagtaccct 15792292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 15693434 - 15693618
Alignment:
Q  33 aacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaa 132  Q
    |||||||| || ||||||||||  || |||| ||| |||||| ||||||| || |||| ||| |||||| |||| ||||||||  |||| ||  | ||||    
T  15693434 aacataccaaacaggtgaaagtccagacttgcattcggcataaactcatacacaagtagcttctcatttccttccaagcagcatgctaaaagtcttacaa 15693533  T
Q  133 ggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagcctttt 217  Q
    |||| | |||||| | ||||||||| || |||||||||||||| ||||||||| | |||||||| || |||  ||| ||||||||    
T  15693534 ggttgcgatgttgcaatttcgctataaacattacttcattcttgaactcctctgagccttgaccagaagttcttgagagcctttt 15693618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 3080224 - 3080060
Alignment:
Q  32 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 131  Q
    ||||||||| || || ||||||| |||||| || |||||||| || |||||||| || | ||||||||| ||||||| ||| ||||| || ||  |||||    
T  3080224 aaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcttcaatgcaacaacccaaaagtctcaca 3080125  T
Q  132 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacc 196  Q
    |||||||||||||| | ||| || || || |||||||||||||| ||||| ||| ||||||||||    
T  3080124 aggtttctatgttgcaatttagcaataaagattacttcattcttgaactcttctgaaccttgacc 3080060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 3094100 - 3093936
Alignment:
Q  32 aaacataccgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcaca 131  Q
    ||||||||| || || ||||||| |||||| || |||||||| || |||||||| || | ||||||||| || |||| ||| ||||| || ||  |||||    
T  3094100 aaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaaaagtctcaca 3094001  T
Q  132 aggtttctatgttgtagtttcgctatgaaaattacttcattcttaaactcctctaaaccttgacc 196  Q
    |||||||||||||||| ||| ||||| || |||||||||||  | |||||||| |||||||||||    
T  3094000 aggtttctatgttgtaatttagctataaagattacttcatttgtgaactcctccaaaccttgacc 3093936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 254
Target Start/End: Complemental strand, 3121068 - 3120871
Alignment:
Q  57 aggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttctatgttgtagtttcgcta 156  Q
    ||||||||||| ||||| |||||||| |  || | |||||||||||  |||| |||| || |||| ||  |||||||||| | ||| || | ||| ||||    
T  3121068 aggcttgaattaggcatgtactcatagataagcagcttttcattttgctcaatgcagaaagctaacagtctcacaaggttccgatgctgcaatttggcta 3120969  T
Q  157 tgaaaattacttcattcttaaactcctctaaaccttgacctgacgtttctgaaagccttttggctgcaatttcggtcccatctggtaaagtaccctaa 254  Q
    | || |||||||||||||| || ||||| | ||||||| | || ||||  |||||||||||  | ||||||||  | ||||||| ||||  |||||||    
T  3120968 tcaacattacttcattcttgaattcctcaacaccttgaaccgatgttttcgaaagccttttaacagcaatttcccttccatctgctaaaacaccctaa 3120871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 194
Target Start/End: Original strand, 4549221 - 4549358
Alignment:
Q  57 aggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagcttcacaaggtttctatgttgtagtttcgcta 156  Q
    ||||| || |||||||| || |||||||  || | ||||||||| || |||| ||| ||||| || ||  |||||||||| |||||||| | ||| ||||    
T  4549221 aggctagagtttggcatgtattcatatagaagcaacttttcattatcctcaatgcaacaacccaatagtctcacaaggttcctatgttgcaatttagcta 4549320  T
Q  157 tgaaaattacttcattcttaaactcctctaaaccttga 194  Q
    | || |||||||||||  | ||||| ||||||||||||    
T  4549321 taaagattacttcatttgtgaactcttctaaaccttga 4549358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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