View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_2 (Length: 807)
Name: NF13096_low_2
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 763; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Original strand, 39220483 - 39221261
Alignment:
| Q |
18 |
atctatgtgtggattgggaaaaattgtgacttggttatgtcatgcaacgcaaagagtgcggcttttcaggttgtgcgctatgagggagcaaagggtccaa |
117 |
Q |
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| T |
39220483 |
atctatgtgtggattgggaaaaattgtgacttggttatgtcatgcaacgcaaagagtgcggcttttcaggttgtgcgctatgagggagcaaagggtccaa |
39220582 |
T |
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| Q |
118 |
ttttgagcatccgtgaagatcaagaatcagctgagttttggattgctctttctgatcagcaacgtttgtcaggtgattctgataaacaactggttttgcc |
217 |
Q |
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| T |
39220583 |
ttttgagcatccgtgaagatcaagaatcagctgagttttggattgctctttctgatcagcaacgtttgtcaggtgattctgataaacaactggttttgcc |
39220682 |
T |
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| Q |
218 |
tactgaaaagatggagattggtctaagaaaagttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttt |
317 |
Q |
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| T |
39220683 |
tactgaaaagatggagattggtctaagaaaagttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttt |
39220782 |
T |
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| Q |
318 |
tctgtagctaattctggatcagaaacttctcttcctgctacaggacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatct |
417 |
Q |
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| T |
39220783 |
tctgtagctaattctggatcagaaacttctcttcctgctacagaacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaagaaatct |
39220882 |
T |
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| Q |
418 |
taacatctcccaaatggaagtgtgatgtgattatggaggaagaaaaacaagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtca |
517 |
Q |
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| T |
39220883 |
taacatctcccaaatggaagtgtgatgtgattatggaggaagaaaaacaagattttgcagctgatgatgatcccttgtcagcgtcgccgtcatcaagtca |
39220982 |
T |
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| Q |
518 |
tcgaagtgactgtggttctccagattcttttgaatgttatccgaacagcttaagcaaagcaaaagatactgatgaagccatggacttgtcagaatctgat |
617 |
Q |
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| T |
39220983 |
tccaagtgactgtggttctccagattcttttgaatgttatccgaacagcttaagcaaggcaaaagatactgatgaagccatggacttgtctgaatctgat |
39221082 |
T |
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| Q |
618 |
tctggtgttgcttctttgatgccactatctccttgtggcacttcttttccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacac |
717 |
Q |
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| T |
39221083 |
tctggtgttgcttctttgatgccactatctccttgtggcacttcttttccttgttgttttccaagcagcagcccaagattcaattccaagtcgccaacac |
39221182 |
T |
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| Q |
718 |
tttcaccttcaagttctgattatgcgagttcgtttacattttcgccttcctctaccaattggtctgacttgtcattcat |
796 |
Q |
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| T |
39221183 |
tttcaccttcaagttctgattatgcgagttcgtttacattttcgccttcctctaccaattggtctgacttgtcattcat |
39221261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 411
Target Start/End: Original strand, 37347951 - 37348119
Alignment:
| Q |
243 |
agaaaagttgatgcttatgatttggattttgagattttccacaaggcaatttctggtggggttgttccacctttttctgtagctaattctggatcagaaa |
342 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||| ||| || | || || ||||||||||||||||||||| ||||| | |||||||||| |
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| T |
37347951 |
agaaaagttgatgagtatgatttggattttgggatttttcacaaagcacttgcagggggtgttgttccacctttttctgtatctaatacaggatcagaaa |
37348050 |
T |
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| Q |
343 |
cttctcttcctgctacaggacatggttgggcaagattgaggaggaaatttgctagtggtgtcatgaaag |
411 |
Q |
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| T |
37348051 |
ccttgcttcctgctagagaaaatagctggggaagactaaggaggaagcttgctaatggtatcatgaaag |
37348119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 701 - 796
Target Start/End: Original strand, 37348418 - 37348513
Alignment:
| Q |
701 |
ttccaagtcgccaacactttcaccttcaagttctgattatgcgagttcgtttacattttcgccttcctctaccaattggtctgacttgtcattcat |
796 |
Q |
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| T |
37348418 |
ttccaagtcgctgacactttctccttccaattctgattgtgatagttcctttacattttcgcctgcatctacaaattggtctgatttgtcattcat |
37348513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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