View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_20 (Length: 362)
Name: NF13096_low_20
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_20 |
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| [»] scaffold0185 (1 HSPs) |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 8259668 - 8259991
Alignment:
| Q |
13 |
aatatgaaacat-gagagtttgtcaaactcgataatatatactcaataccctgaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259668 |
aatatgaaacattgagagtttgtcaaactcgataatatatactcaataccctcaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
8259767 |
T |
|
| Q |
112 |
gtatcaaagaggagaaacaaaagttagtaaccattataaagaggaacagttgtgagagaaaaatcattgtagagacgagtaaccaaagaagaagctacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8259768 |
gtatcaaagaggagaaacaaaagttagtaaccattatagagaggaacaattgtgagagaaaaatcattgtagagacgagtaaccaaataagaagctacac |
8259867 |
T |
|
| Q |
212 |
cccgggagatgaaccatcatagagaagaaccaaaccaacaaagagaaacaaccgaacaaaagagttagcgaggagataagtaaccaaacagaaaaagaga |
311 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8259868 |
cccgagagatgaaccatcatagagaagaatcaaaccaacaaagagaaacaaccgaacaaaagagttaacgaggagataagtaaccaaacagaaaaagaga |
8259967 |
T |
|
| Q |
312 |
ggagaaatcaaatagaagaatcga |
335 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
8259968 |
ggataaatcaaatagaagaatcga |
8259991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 335
Target Start/End: Original strand, 8273086 - 8273409
Alignment:
| Q |
13 |
aatatgaaacat-gagagtttgtcaaactcgataatatatactcaataccctgaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8273086 |
aatatgaaacattgagagtttgtcaaactcgataatatatactcaataccctcaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
8273185 |
T |
|
| Q |
112 |
gtatcaaagaggagaaacaaaagttagtaaccattataaagaggaacagttgtgagagaaaaatcattgtagagacgagtaaccaaagaagaagctacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8273186 |
gtatcaaagaggagaaacaaaagttagtaaccattatagagaggaacaattgtgagagaaaaatcattgtagagacgagtaaccaaataagaagctacac |
8273285 |
T |
|
| Q |
212 |
cccgggagatgaaccatcatagagaagaaccaaaccaacaaagagaaacaaccgaacaaaagagttagcgaggagataagtaaccaaacagaaaaagaga |
311 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8273286 |
cccgagagatgaaccatcatagagaagaatcaaaccaacaaagagaaacaaccgaacaaaagagttaacgaggagataagtaaccaaacagaaaaagaga |
8273385 |
T |
|
| Q |
312 |
ggagaaatcaaatagaagaatcga |
335 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
8273386 |
ggataaatcaaatagaagaatcga |
8273409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 274
Target Start/End: Original strand, 3654 - 3711
Alignment:
| Q |
217 |
gagatgaaccatcatagagaagaaccaaaccaacaaagagaaacaaccgaacaaaaga |
274 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| |||| |||| |
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|
| T |
3654 |
gagatgaaccatcatagagaagagtcacaccaacaaagagaaacaaccaaacagaaga |
3711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 274
Target Start/End: Original strand, 62192 - 62282
Alignment:
| Q |
184 |
agacgagtaaccaaagaagaagctacaccccgggagatgaaccatcatagagaagaaccaaaccaacaaagagaaacaaccgaacaaaaga |
274 |
Q |
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||||||| ||||||||| ||||| ||| | |||||||| ||| |||||||||||||||||||| ||||| ||||| || ||| ||||| |
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| T |
62192 |
agacgagcaaccaaagaggaagcaacaatcgaagagatgaatcattatagagaagaaccaaaccaataaagaaaaacagccaaactaaaga |
62282 |
T |
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