View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_21 (Length: 357)

Name: NF13096_low_21
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_21
NF13096_low_21
[»] chr2 (1 HSPs)
chr2 (13-357)||(2458606-2458940)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 2458606 - 2458940
Alignment:
Q  13 aaatatacatacgatctaattatgtttgcatgcttcaaaggtctctttatggcctcaaggaagctccaaatgcatacactaatatatatgtggccataaa 112  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2458606 aaatatacatac--tctaattatatttgcatgcttcaaaagtctctttatggcctcaacgaagctccaaatgcatacactaatatatatgtggccataaa 2458703  T
Q  113 gacaatattaattgtggcctattttgttgtctatgttgatgatttacttttcaacggtaactccttcaattttcatctcggtgttgagcttcttcccatt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2458704 gacaatattaattgtggcctattttgttgtctatgttgatgatttacttttcaacggtaacaccttcaattttcatctcggtgttgagcttcttcccatt 2458803  T
Q  213 tcaaaatgcatttttctttcccaatgacattatatatatccaagatatacttcaaataggaaacatgattgatatataccaaacttgtgtgtactcctat 312  Q
    |||||||||||||||||||||||||||||||||||    ||||||||||||||||| ||||||||||||||||     ||||||||||||||||||||||    
T  2458804 tcaaaatgcatttttctttcccaatgacattatat----ccaagatatacttcaaaaaggaaacatgattgatg----ccaaacttgtgtgtactcctat 2458895  T
Q  313 tcctcccacatcaaactcttgtactatattatagtttgttatgtt 357  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  2458896 tcctcccacatcaaactcttctactatattatagtttgttatgtt 2458940  T

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