View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_22 (Length: 355)
Name: NF13096_low_22
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 51806192 - 51805859
Alignment:
| Q |
16 |
taagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaaggagacatcataagtcttgatttttcaggttggtcatcactttc |
115 |
Q |
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| T |
51806192 |
taagcaaagtggataaaccaatctgcgacttcaccggaatcacctgtgacaacaaaggagacatcataagtcttgatttttcaggttggtcatcactttc |
51806093 |
T |
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| Q |
116 |
cggaaacttcccatcaaatatttgctcttaccttccaaatttacgtgtcctaaacctcggtaatacaaaattcaagttcccaacaaacagcataatcaac |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51806092 |
cggaaacttcccgtcaaatatttgctcttaccttccaaatttacgtgtcctaaacctcggtaatacaaaattcaagttcccaacaaacagcataatcaac |
51805993 |
T |
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| Q |
216 |
tgttctcacttagaacaactcaacatgaacaagatgcacctgtcaggaacacttcctgatttctcgtctttaaaatatctcagagtcctcgacttatcat |
315 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805992 |
tgttctcacttagaactactcaacatgaacaagatgcacctgtcaggaacacttcctgatttctcgtctttaaaatatctcagagtcctcgacttatcat |
51805893 |
T |
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| Q |
316 |
acaactccttcaccggcgattttcccatgtctgt |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51805892 |
acaactccttcaccggcgattttcccatgtctgt |
51805859 |
T |
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