View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_23 (Length: 340)
Name: NF13096_low_23
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 340
Target Start/End: Complemental strand, 33904778 - 33904451
Alignment:
| Q |
13 |
aatatggagctttggttgacgtgttcatgccaaagaagtgtaacaaagaaggaaaatcgttcaactttgcaagattcataggggtaatcgacacaaggaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904778 |
aatatggagctttggttgacgtgttcatgccaaagaagcgaaacaaggaaggaaaatcgttcaactttgcaagattcataggggtaatcgacacaaggaa |
33904679 |
T |
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| Q |
113 |
actaaaagatcatctaaggagaaaatgatttggcatgtatgataaaagatgatttcaaaatcctcaacacaataatacgtatttccgcgtttatcaaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904678 |
actaaaagatcatctaaggagaaaatgatttggcatgtatgataaaagatgatttcaaaatcctcaacacaataatacgtatttccgcgtttatcaaaaa |
33904579 |
T |
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| Q |
213 |
taaattacaaaaccacataggccgcgcattagtttagactattctattagtttgacagaattctaaatcaaagtttagactttgttaactattcattcaa |
312 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33904578 |
taaattacgaaaccacataggccgcacattagtttagactattctattagtttgaaagaattctaaatcaaagtttagactttgttaactattcattcaa |
33904479 |
T |
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| Q |
313 |
tgattactattggttgaatgtatatttt |
340 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33904478 |
tgattactattggttgaatgtatatttt |
33904451 |
T |
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