View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_24 (Length: 338)
Name: NF13096_low_24
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_24 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 48100433 - 48100109
Alignment:
| Q |
14 |
atcagtgactgaaagaagatggtgaaagtagttatgcgtgtgtatttagatatttgttataactgaaatttattggcaatgcagtgcgagaatccaactg |
113 |
Q |
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| T |
48100433 |
atcagagactgaaagaagatggtgaaagtagttatgcttgtgtatttagatatttgttataactgaaatttattggcaatgcagtgcgagaatccaactg |
48100334 |
T |
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| Q |
114 |
tggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttgagagggtaagctagtccaaatt |
213 |
Q |
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| T |
48100333 |
tggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttgagagggtaagctagtccaaatt |
48100234 |
T |
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| Q |
214 |
ttcgatactactcgctcgacattttagacattaaatttacataaaagtcaatgcctcttatcttattttcactttagatcctagtaatcatgttgtcagc |
313 |
Q |
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| T |
48100233 |
ttcaatactactcactcgacattttagacattaaatttacataaaagtcaatgcctcttatcttattttcactttagatcctagtaatcatgttgtcagc |
48100134 |
T |
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| Q |
314 |
aacagaaatgaacttaatagcagac |
338 |
Q |
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| T |
48100133 |
aacagaaatgaacttaatagcagac |
48100109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 48067331 - 48067189
Alignment:
| Q |
74 |
aactgaaatttattggcaatgcagtgcgagaatccaact------gtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatgga |
167 |
Q |
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| T |
48067331 |
aactgaaatttactagcaatgcagagcaagaatccaagtccaggtgtggaattatggactgatagtgtctctttacaaccattcaacaaaacacaatgga |
48067232 |
T |
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| Q |
168 |
gatcacagcaagacgatagcgttgagagggtaagctagtccaa |
210 |
Q |
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| T |
48067231 |
gatcacaccaagccgacagcattgagagggtaagctaatccaa |
48067189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 48063344 - 48063232
Alignment:
| Q |
92 |
atgcagtgcgagaatccaactgtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagacgatagcgttg |
191 |
Q |
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| T |
48063344 |
atgcagagtgagaatccaattgtggaattatgggttcatagtgtctccttacaaccattcaccagagagcaatggaggtcacaccaagatagcagcattg |
48063245 |
T |
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| Q |
192 |
agagggtaagcta |
204 |
Q |
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| T |
48063244 |
agagggtaagcta |
48063232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 181
Target Start/End: Complemental strand, 48107005 - 48106936
Alignment:
| Q |
112 |
tgtggaactatgggctgatagtgtctccttacaaccattcaccaagaaacaatggagatcacagcaagac |
181 |
Q |
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| T |
48107005 |
tgtggaaatatgggctgatagtgtgtccttgcaaccatttactaaaaaggaatggagatcacaccaagac |
48106936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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