View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_25 (Length: 324)

Name: NF13096_low_25
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_25
NF13096_low_25
[»] chr3 (5 HSPs)
chr3 (10-306)||(24758053-24758362)
chr3 (10-306)||(24767050-24767359)
chr3 (10-52)||(24754414-24754456)
chr3 (10-52)||(24763411-24763453)
chr3 (10-45)||(24994937-24994972)
[»] chr1 (1 HSPs)
chr1 (76-306)||(42428428-42428679)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 24758053 - 24758362
Alignment:
Q  10 aagaatataaaataacagaggaagaggattaaaaaacaatctatgagcata--------acagaggaaaagtaaaaatatatgcatgtatctgcatatct 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||    
T  24758053 aagaaaataaaataacagaggaagaggattaaaaaacaatctatgagcatatctgcataacagaggaaaagtaaaaatataagcatgtatctgcatatct 24758152  T
Q  102 gcgcgattgcgcatgtgtgagcaatggcaatacatcaaaagagagatgctgattatgagtttgt-----acaattattacctattttctattcttttgat 196  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  24758153 gcgcgattgcgcatgtgtgagcgatggcaatacatcaaaagatagatgctgattatgagtttgtcaaagacaattattacctattttctattcttttgat 24758252  T
Q  197 aacgttttcaacaacttatcttgtaatgagaatgatcggatttctttcaataaatgcaatctcacgtgcataaggagtaacgaaggaaaccagtttattt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24758253 aacgttttcaacaacttatcttgtaatgagaatgatcggatttctttcaataaatgcaatctcacgtgcataaggagtaacgaaggaaaccagtatattt 24758352  T
Q  297 caatatctat 306  Q
    ||||||||||    
T  24758353 caatatctat 24758362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 24767050 - 24767359
Alignment:
Q  10 aagaatataaaataacagaggaagaggattaaaaaacaatctatgagcata--------acagaggaaaagtaaaaatatatgcatgtatctgcatatct 101  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||| ||||||||||||||||||    
T  24767050 aagaaaataaaataacagaggaagaggattaaaaaacaatctatgagcatatctgcataacagaggaaaagtaaaaatataagcatgtatctgcatatct 24767149  T
Q  102 gcgcgattgcgcatgtgtgagcaatggcaatacatcaaaagagagatgctgattatgagtttgt-----acaattattacctattttctattcttttgat 196  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  24767150 gcgcgattgcgcatgtgtgagcgatggcaatacatcaaaagatagatgctgattatgagtttgtcaaagacaattattacctattttctattcttttgat 24767249  T
Q  197 aacgttttcaacaacttatcttgtaatgagaatgatcggatttctttcaataaatgcaatctcacgtgcataaggagtaacgaaggaaaccagtttattt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24767250 aacgttttcaacaacttatcttgtaatgagaatgatcggatttctttcaataaatgcaatctcacgtgcataaggagtaacgaaggaaaccagtatattt 24767349  T
Q  297 caatatctat 306  Q
    ||||||||||    
T  24767350 caatatctat 24767359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 24754414 - 24754456
Alignment:
Q  10 aagaatataaaataacagaggaagaggattaaaaaacaatcta 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  24754414 aagaaaataaaataacagaggaagaggattaaaaaacaatcta 24754456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 24763411 - 24763453
Alignment:
Q  10 aagaatataaaataacagaggaagaggattaaaaaacaatcta 52  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  24763411 aagaaaataaaataacagaggaagaggattaaaaaacaatcta 24763453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 24994972 - 24994937
Alignment:
Q  10 aagaatataaaataacagaggaagaggattaaaaaa 45  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24994972 aagaaaataaaataacagaggaagaggattaaaaaa 24994937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 76 - 306
Target Start/End: Original strand, 42428428 - 42428679
Alignment:
Q  76 aaatatatgcatgtatctgcatatctgcgcgattgcgcatgtgtgagcaatggcaatacatcaaaagagagatgctgattatgagtttgt-----acaat 170  Q
    ||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||| |||| ||||  ||||||||||     |||||    
T  42428428 aaatatatgcatgtatctgtatgtctgcacgcttgcgcatgtgtgagcaatggcaatacatcaaaagatagatactgaccatgagtttgtcaaagacaat 42428527  T
Q  171 tattacctattttctattcttttgataacgttttcaacaacttatcttgtaatgagaatgatcggatttcttt----------------caataaatgca 254  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                ||| |||||||    
T  42428528 tattacctattttctattcttttgacaacgttttcaacaacttatcttgtaatgagaatgatcggatttctttcaactccaacagaaaccaaaaaatgca 42428627  T
Q  255 atctcacgtgcataaggagtaacgaaggaaaccagtttatttcaatatctat 306  Q
    |||| |||||||||||||||||||||||||||| |||||||||||| |||||    
T  42428628 atcttacgtgcataaggagtaacgaaggaaaccggtttatttcaatctctat 42428679  T

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