View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13096_low_27 (Length: 313)
Name: NF13096_low_27
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 5174727 - 5175000
Alignment:
| Q |
11 |
cacagacgaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaatt |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174727 |
cacaaacgaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaatt |
5174826 |
T |
|
| Q |
111 |
gattaatgtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatctttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174827 |
gattaatgtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatctttt |
5174926 |
T |
|
| Q |
211 |
ataataatgttacaaatattattggcaaataaaatacattgattaatctaatgatgttacttttttgtttaacg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174927 |
ataataatgttacaaatattattggcaaataaaatacattgattaatctaatgatgttacttttttgtttaacg |
5175000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 52002537 - 52002800
Alignment:
| Q |
18 |
gaaaagaagtgagatatggaatatgcttattatatttggttaaggatgaaaaacaaacttcaattgctgatgacaatatatgaaaagcaaattgattaat |
117 |
Q |
| |
|
||||||||| || |||| ||||||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52002537 |
gaaaagaagagacgtatgcaatatgcttataatacttggttaaggacgaaaaacaaagttcaattgctgatgacaatatatgaaaagcaaattgattaat |
52002636 |
T |
|
| Q |
118 |
gtgagaaaagaaaaaggagtttagtatttggatttaatttgatcaaatatcaggtaaagatttagtggaaacaaaccattgaatctatcttttataataa |
217 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| || | |
|
|
| T |
52002637 |
gtgagaaaagaaaaaggtgttcagtatttggatttaatttgatcaaatatcaagtaaagatttagtggaaacaaaccgtagaatctatctttt---atga |
52002733 |
T |
|
| Q |
218 |
tgttacaaatattattggcaaataaaatacattgattaatctaatgatgttacttttttgtttaacg |
284 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |
|
|
| T |
52002734 |
tggtacaaatattattggcaaataaaataccttgattaatcttattatgttacttttttgtttaacg |
52002800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University