View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13096_low_3 (Length: 696)

Name: NF13096_low_3
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13096_low_3
NF13096_low_3
[»] chr8 (3 HSPs)
chr8 (433-525)||(13659621-13659713)
chr8 (433-525)||(13718263-13718355)
chr8 (443-524)||(28811057-28811138)
[»] chr4 (9 HSPs)
chr4 (441-528)||(51928846-51928933)
chr4 (443-528)||(20485680-20485765)
chr4 (443-524)||(27487869-27487950)
chr4 (443-524)||(47042612-47042693)
chr4 (443-524)||(27461056-27461137)
chr4 (445-521)||(24354854-24354930)
chr4 (447-524)||(27505196-27505273)
chr4 (446-520)||(27480406-27480480)
chr4 (443-524)||(27477320-27477401)
[»] chr5 (1 HSPs)
chr5 (443-528)||(13912386-13912471)
[»] chr2 (3 HSPs)
chr2 (443-528)||(26204040-26204125)
chr2 (435-524)||(35808794-35808883)
chr2 (445-521)||(42348134-42348210)
[»] chr1 (1 HSPs)
chr1 (442-525)||(42396947-42397030)
[»] chr7 (2 HSPs)
chr7 (443-524)||(37175753-37175834)
chr7 (11-59)||(3664036-3664084)
[»] chr6 (2 HSPs)
chr6 (442-524)||(22685790-22685872)
chr6 (442-524)||(22753196-22753278)


Alignment Details
Target: chr8 (Bit Score: 81; Significance: 9e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 433 - 525
Target Start/End: Complemental strand, 13659713 - 13659621
Alignment:
Q  433 aaacaacattgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgt 525  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13659713 aaacaacatagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgt 13659621  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 433 - 525
Target Start/End: Complemental strand, 13718355 - 13718263
Alignment:
Q  433 aaacaacattgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgt 525  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13718355 aaacaacatagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgt 13718263  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 524
Target Start/End: Complemental strand, 28811138 - 28811057
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28811138 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 28811057  T

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Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 441 - 528
Target Start/End: Original strand, 51928846 - 51928933
Alignment:
Q  441 ttgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgtttt 528  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51928846 ttgtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgtttt 51928933  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 443 - 528
Target Start/End: Complemental strand, 20485765 - 20485680
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgtttt 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20485765 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgtttt 20485680  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 27487869 - 27487950
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27487869 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 27487950  T

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Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 47042612 - 47042693
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47042612 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 47042693  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 27461056 - 27461137
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  27461056 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccctgcgagagttcgaatctctcaggcgacg 27461137  T

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Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 521
Target Start/End: Original strand, 24354854 - 24354930
Alignment:
Q  445 cgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcg 521  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24354854 cgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcg 24354930  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 447 - 524
Target Start/End: Complemental strand, 27505273 - 27505196
Alignment:
Q  447 ctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  27505273 ctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggtgacg 27505196  T

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Target: chr4; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 27480406 - 27480480
Alignment:
Q  446 gctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggc 520  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||    
T  27480406 gctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctctcaggc 27480480  T

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Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 27477320 - 27477401
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| ||| || |||||||||||| ||||    
T  27477320 gtcgctttggccgagtgggtaaggcgtgtgcctgctaattacatggggtttccccgcaagatttcgaatctctcaggtgacg 27477401  T

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Target: chr5 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 13912386 - 13912471
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgtttt 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13912386 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgtttt 13912471  T

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Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 443 - 528
Target Start/End: Original strand, 26204040 - 26204125
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgtttt 528  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26204040 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgtttt 26204125  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 435 - 524
Target Start/End: Original strand, 35808794 - 35808883
Alignment:
Q  435 acaacattgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35808794 acaacatagtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 35808883  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 445 - 521
Target Start/End: Complemental strand, 42348210 - 42348134
Alignment:
Q  445 cgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcg 521  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42348210 cgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcg 42348134  T

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Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 442 - 525
Target Start/End: Complemental strand, 42397030 - 42396947
Alignment:
Q  442 tgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacgt 525  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42397030 tgtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacgt 42396947  T

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Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 443 - 524
Target Start/End: Original strand, 37175753 - 37175834
Alignment:
Q  443 gtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37175753 gtcgctttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgcgagagttcgaatctctcaggcgacg 37175834  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3664084 - 3664036
Alignment:
Q  11 gaagaatgtgagtgtagtttgggatgcttatgaagcaacaaaagatgca 59  Q
    |||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  3664084 gaagaaagtgagtgtggtttgggatgcatatgaagcaacaaaagatgca 3664036  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 442 - 524
Target Start/End: Complemental strand, 22685872 - 22685790
Alignment:
Q  442 tgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||| ||||    
T  22685872 tgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacg 22685790  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 442 - 524
Target Start/End: Original strand, 22753196 - 22753278
Alignment:
Q  442 tgtcgctttggccgagtggttaaggcgtgtgtctgctaagtacatggggtttccccgcgagagtttgaatctctcaggcgacg 524  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| ||| ||||    
T  22753196 tgtcactttggccgagtggttaaggcgtgtgcctgctaagtacatggggtttccccgtgagagttcgaatctcttaggtgacg 22753278  T

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