View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_31 (Length: 292)
Name: NF13096_low_31
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 6412216 - 6412485
Alignment:
| Q |
16 |
ataggacagagtggaggaagagatttattgaagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaaga |
115 |
Q |
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| T |
6412216 |
ataggacagagtggaggaagagatttatt-aagaaaatttcaatgttagggatgcttctagtattttgtcaataccgctttataaggtggtggatcaaga |
6412314 |
T |
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| Q |
116 |
agatatagcaagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatagacaatagcgaatactgaa |
215 |
Q |
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| T |
6412315 |
agatatagcaagctcaaagtttagtcccaccgaatttacagtgtaaagtttggatattactacgctaaggaacagttgatggacaatagcgaatactgaa |
6412414 |
T |
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| Q |
216 |
aggaaaactatatgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaacata |
286 |
Q |
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| T |
6412415 |
aggaaaactatgtgaaaaagctatggggcttgaaaaatgagtgtaatctacttgacaaagacttcaacata |
6412485 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 13382297 - 13382218
Alignment:
| Q |
65 |
ggatgcttctagtattttgtcaataccgctttataaggtggtggatcaagaagatatagcaagctcaaagtttagtcccaccg |
147 |
Q |
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| T |
13382297 |
ggatgcctctaatattttatcaataccgctttataaggatg---atcaagaagatatagtaagttcaaaatctagtcctaccg |
13382218 |
T |
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