View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_32 (Length: 285)
Name: NF13096_low_32
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 40688883 - 40688619
Alignment:
| Q |
1 |
atatgttcattatcatcatatgctggaaaataatgacgagatttattatttgtttgtgc----atgcgtgtgcaaacacgaaagagaagaaaccattttt |
96 |
Q |
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| T |
40688883 |
atatgttcattatcatcatatgctggaaaataatgacgagatttattatttgtttgtgcatgcatgcgtgtgcaaacacgaaagagaag-aaccattttt |
40688785 |
T |
|
| Q |
97 |
tgtagagttacttgacattgacatgagtacatcttagtcttacaactttttgcttccgttttaaagcaactgaacgttgacaatcagcagcttacattaa |
196 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
40688784 |
tgtagagttacttgacattgacattagtaca------tcttacaactctttgctttcgtttcaaagcaactgagcgttgacaatcagcagcttacattaa |
40688691 |
T |
|
| Q |
197 |
tcacataaatccacttggaaacattctcatatattcatgatttgccnnnnnnngaatatatatgatctgtgt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
40688690 |
tcacataaatccacttggaaacattctcatatattcatgatttgcctttttttgaataaatatgatctgtgt |
40688619 |
T |
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