View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_33 (Length: 285)
Name: NF13096_low_33
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 39841117 - 39841391
Alignment:
| Q |
14 |
caaacttgtcaagactatcgattctttcactcttaattgtgttaagtaccttttccattgttggcnnnnnnnccttgtgttcttgattggtaacaaaagt |
113 |
Q |
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| T |
39841117 |
caaacttgtcaagactatcgattctttcactcttaattgtgttaagtaccttttccattgttggcaaaaaa-ccttgtgttcttgattggtaacaaaagt |
39841215 |
T |
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| Q |
114 |
ttttcatttgattcacatatatagtgagcatgcaaggacga--------atatacggtagctacatgtgacgatcgcaacacttgatgaagagaaaggta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
39841216 |
ttttcatttgattcacatatatagtgagcatgcaaggacgaataaacgaatatacggtagctacatgtggtaatcacaacacttgatgaagagaaaggta |
39841315 |
T |
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| Q |
206 |
aaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtctttttccttctttccaattgctt |
281 |
Q |
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| T |
39841316 |
aaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtctttttccttatttccaattgctt |
39841391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 87 - 281
Target Start/End: Complemental strand, 39730829 - 39730627
Alignment:
| Q |
87 |
cttgtgttcttgattggtaacaaaagtttttcat-ttgattcacatatatagtgagcatgcaaggacgaata--------tacggtagctacatgtgacg |
177 |
Q |
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| T |
39730829 |
cttgcgttcttgattagtaacaaaagtttttcacgttgattcacatatatagtgagcatgcaaggacgaataaacgaatatacggtagctacatgtggta |
39730730 |
T |
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| Q |
178 |
atcgcaacacttgatgaagagaaaggtaaaaaggtcaataactgctttctattttgaggcttcatcttagattatcaagtctttttccttctttccaatt |
277 |
Q |
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| T |
39730729 |
atcacaacacttgatgaagagaaaggtaaaaaggtcaataactgcattcta-tttgaggcttcatattagattatcaagtctttttccttctttccaatt |
39730631 |
T |
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| Q |
278 |
gctt |
281 |
Q |
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|||| |
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| T |
39730630 |
gctt |
39730627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 39729396 - 39729332
Alignment:
| Q |
14 |
caaacttgtcaagactatcgattctttcactcttaattgtgttaagtacc-ttttccattgttgg |
77 |
Q |
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| T |
39729396 |
caaacttgtcaagactatcaattctttcactattaattgtgttatgtacctttttccattgttgg |
39729332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 29855565 - 29855522
Alignment:
| Q |
207 |
aaaggtcaataactgctttctattttgaggcttcatcttagatt |
250 |
Q |
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| T |
29855565 |
aaaggtcaataactgttttctatatttaggcttcatcttagatt |
29855522 |
T |
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