View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_36 (Length: 265)
Name: NF13096_low_36
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-147; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10992465 - 10992727
Alignment:
| Q |
1 |
aaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatcacaaataactttagtgacaagttaggacaaggt |
100 |
Q |
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| T |
10992465 |
aaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatcacaaataactttagtgacaagttaggacaaggt |
10992564 |
T |
|
| Q |
101 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatttttctcaaggaaacgggcaagatttcctcaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992565 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatttttctcaaggaaacgggcaagatttcctcaatg |
10992664 |
T |
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| Q |
201 |
aagttggtacaattggtagaacccatcatgttaatattgttagattggtcggtttctgtgctg |
263 |
Q |
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| T |
10992665 |
aagttggtacaattggtagaacccatcatgttaatattgttagattggtcggtttctgtgctg |
10992727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10930261 - 10930523
Alignment:
| Q |
1 |
aaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatcacaaataactttagtgacaagttaggacaaggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||| |||||||||||||| ||| | |||||||||||||||||| |
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| T |
10930261 |
aaagtttttagaagattatagagctcttaagcccacaagatactcatatgaagaaattaaaagaatcacaaataattttggcgacaagttaggacaaggt |
10930360 |
T |
|
| Q |
101 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatttttctcaaggaaacgggcaagatttcctcaatg |
200 |
Q |
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| T |
10930361 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatgtttcacaaggaaacgggcaagatttcctcaatg |
10930460 |
T |
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| Q |
201 |
aagttggtacaattggtagaacccatcatgttaatattgttagattggtcggtttctgtgctg |
263 |
Q |
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| T |
10930461 |
aagttggtacaatgggtagaatccatcatgttaatattgttagattggtcggtttctgtgctg |
10930523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 11025921 - 11026183
Alignment:
| Q |
1 |
aaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatcacaaataactttagtgacaagttaggacaaggt |
100 |
Q |
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|
||||||||||||||| ||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||| || | || | |||||||||||| |
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| T |
11025921 |
aaagtttttagaagactatagagttcttaagcccaccagatactcttatgtagaaatcaagagaatcacaaataatttcggggatatgttaggacaagga |
11026020 |
T |
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| Q |
101 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatttttctcaaggaaacgggcaagatttcctcaatg |
200 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||||||||||| ||||||| ||||| || ||||| ||||| |||| |
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| T |
11026021 |
gcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgtttctcagggaaatggccaagacttcctaaatg |
11026120 |
T |
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| Q |
201 |
aagttggtacaattggtagaacccatcatgttaatattgttagattggtcggtttctgtgctg |
263 |
Q |
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||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
11026121 |
aagttggtacaatgagtagaatccaccatgttaatattgtccgattggtcggtttctgtgctg |
11026183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 11040624 - 11040878
Alignment:
| Q |
1 |
aaagtttttagaagattatagagctcttaaacccacgagatactcttatgtagaaattaagagaatcacaaataactttagtgacaagttaggacaaggt |
100 |
Q |
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||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||| || | || | |||||||||||| |
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| T |
11040624 |
aaagtttttagaagactatagagctcttaagccaaccagatactcttatgtagaaattaagagaatcacaaataatttcggggatatgttaggacaagga |
11040723 |
T |
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| Q |
101 |
gcctatggaactgtatatagaggaagcatttcaaaagaaatcattgttgctgtgaagatactaaatttttctcaaggaaacgggcaagatttcctcaatg |
200 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| | | |||||||||||||||||||||| ||||||| ||||| || ||||| ||||| |||| |
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| T |
11040724 |
gcctatggaactgtttataaaggaagcatttcaaaagaatttagtgttgctgtgaagatactaaatgtttctcagggaaatggccaagacttcctaaatg |
11040823 |
T |
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| Q |
201 |
aagttggtacaattggtagaacccatcatgttaatattgttagattggtcggttt |
255 |
Q |
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|||| |||||||| ||||||| || ||||||||||||||| | ||| ||||||| |
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| T |
11040824 |
aagtgggtacaatgggtagaatacaccatgttaatattgttcgtttgatcggttt |
11040878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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