View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_38 (Length: 259)
Name: NF13096_low_38
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 3232918 - 3232721
Alignment:
| Q |
42 |
catcatcacatggttggtataactttgttgcacaattttttaagtgtttttcaaaccatgatgactgggttggtgcatgaggagggggatcatttgatag |
141 |
Q |
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| T |
3232918 |
catcaccacatggttggtataactttgttgcacaattttttaagtgtttttcaaaccatgatgactgggttggtgcatgaggagggggatcatttgatag |
3232819 |
T |
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| Q |
142 |
ttgaacatgagatgaaattccggtttgaactaacaaagcacaataagctattactattggtaataaactaaaggtgttgaatgtagccatgggttgat |
239 |
Q |
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| T |
3232818 |
ttgaacatgagatgaaattccggtttgaactaacaaagcacaataagctattactattggtaataaactaaaggtgttgaatgttgccatgggttgat |
3232721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 233
Target Start/End: Complemental strand, 3235503 - 3235312
Alignment:
| Q |
42 |
catcatcacatggttggtataactttgttgcacaattttttaagtgtttttcaaaccatgatgactgggttggtgcatgaggagggggatcatttgatag |
141 |
Q |
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||||| ||||||||||||||| |||||| |||||||||||||| || ||||||||| |||||| |||||||| ||||| | ||||||| |||||||||| |
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| T |
3235503 |
catcaccacatggttggtatacctttgtagcacaattttttaaatgcttttcaaacaatgatggctgggttgatgcatcaagagggggttcatttgatac |
3235404 |
T |
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| Q |
142 |
ttgaacatgagatgaaattccggtttgaactaacaaagcacaataagctattactattggtaataaactaaaggtgttgaatgtagccatgg |
233 |
Q |
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|||| |||||||||||||||| |||| ||||||||||||| |||||| || ||||||||||||||||||||| || |||||||||||||||| |
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| T |
3235403 |
ttgagcatgagatgaaattccagtttcaactaacaaagcaaaataagttaatactattggtaataaactaaaagtattgaatgtagccatgg |
3235312 |
T |
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