View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_4 (Length: 585)
Name: NF13096_low_4
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 8072703 - 8073291
Alignment:
| Q |
1 |
ataagaaccgaaaccaacaacaatttcaaatgcaactgcaaatgtttccaaatcatcagaaccataattatggaccgtcctcttcttctgttacattggg |
100 |
Q |
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| T |
8072703 |
ataagaaccaaaaccaacaacaatttcaaatgcaactgcaaatgtttccaaatcatcagaaccataattatggaccgtcctcttcttctgttacattggg |
8072802 |
T |
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| Q |
101 |
catcaacatcaacaacaatgataataatggcctaatagctcttcctgatctgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttc |
200 |
Q |
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| T |
8072803 |
catcaacatcaacaacaatgataataatggcctaatagctcttcctgatctgaactcaacagcagaagagttgatcgacgcggcctcgtatcaacagttc |
8072902 |
T |
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| Q |
201 |
gatgaaactacaacaaatagagttttggcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaac |
300 |
Q |
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| T |
8072903 |
gatgaaactacaacaaatagagttttggcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaac |
8073002 |
T |
|
| Q |
301 |
aatatttaatttgatgtatattttatttccttcttagtttcctctctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttg---- |
396 |
Q |
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| T |
8073003 |
aatatttaatttgatgtatattttatttccttcttagtttcctctctcttttagaaattcaaatgtactgaaaaggaagttttgtaaagatatttgattt |
8073102 |
T |
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| Q |
397 |
------------annnnnnngtgtgatttaaacatggtattttatggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaacatctggtttgt |
484 |
Q |
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| T |
8073103 |
ttttaatgcatgatttttttgtgtgatttaaacatggtattttatggcatgaagttattgcaccgtgaaatgtcatatgaaattgaaacatctggtttgt |
8073202 |
T |
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| Q |
485 |
gaggtttgatttgctgagggcttgaacaaagtttaatttgacttttgatagaatatatactgttttaaaactaggtacatttattaatt |
573 |
Q |
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| T |
8073203 |
gaggtttgatttgctgagggcttgaacaaagtttaatttgacttttgatagaatatatactgttttaaaactaggtacatttattaatt |
8073291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 8069323 - 8069454
Alignment:
| Q |
228 |
gcagcagctcaagctaggaagacaaggcttcaaattttcaggctcaagaaaccttttggaaacaatagcaaacaatatttaatttgatgtatattttatt |
327 |
Q |
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|||||||||||||||||| | | ||||||||| | ||||||||||| ||||||||||||||||| || |||||| ||| | |||||||| ||||||||| |
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| T |
8069323 |
gcagcagctcaagctaggcaaagaaggcttcagaaattcaggctcaaaaaaccttttggaaacaagagtaaacaacattcattttgatgtttattttatt |
8069422 |
T |
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| Q |
328 |
tccttcttagtttcctctctcttttagaaattca |
361 |
Q |
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| T |
8069423 |
tcctttttagtttc--ctctcttttagaaattca |
8069454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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