View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_43 (Length: 250)
Name: NF13096_low_43
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_43 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 28269525 - 28269287
Alignment:
| Q |
1 |
actcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28269525 |
actcgcaggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcg |
28269426 |
T |
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| Q |
101 |
ccacataattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaaaatcaaagtgtttgtatatgcaatcacattttcttctgcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28269425 |
ccacataattgtatcagcacctacatcaaaagagttggtgaagaaattggaggtaaaatcaaag----tgtatatgcaatcacattttcttctgcagaat |
28269330 |
T |
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| Q |
201 |
taagaaacaaattatttatagttattatgtttgattcatctca |
243 |
Q |
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| T |
28269329 |
taagaaacaaattatttatagttattatgtttgattcatctca |
28269287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 79255 - 79404
Alignment:
| Q |
7 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
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| T |
79255 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
79354 |
T |
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| Q |
107 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
156 |
Q |
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| T |
79355 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
79404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 40887029 - 40886880
Alignment:
| Q |
7 |
aggtgggattagtaaatgttgatggatactttaattcgttactttcattcatcgacaaagctgtggaagagggatttatcagtccaaatgcgcgccacat |
106 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||||| || ||||| ||||||||||| || ||||| |
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| T |
40887029 |
aggttggattagtaaatgttgatggatactttaactccttgttgtcattcattgacaaagctgtggaagaagggtttattagtccaaatgctcgtcacat |
40886930 |
T |
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| Q |
107 |
aattgtatcagcacctacatcaaaagagttagtgaagaaattggaggtaa |
156 |
Q |
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||||||||||||||| || |||||||||| || |||||||||||||||| |
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| T |
40886929 |
aattgtatcagcaccaactgcaaaagagttggtcaagaaattggaggtaa |
40886880 |
T |
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