View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_45 (Length: 248)
Name: NF13096_low_45
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 39120022 - 39120249
Alignment:
| Q |
17 |
aaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttgggctgagtggcactacaa |
115 |
Q |
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| T |
39120022 |
aaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttacattgggctgagtggcactacga |
39120121 |
T |
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| Q |
116 |
tactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccct------ccctgtcccactatgtttccaactccata |
209 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39120122 |
tactgcaagtcactctgccacaagtttgtctgcgtttcaggttgtatatagtcgcaaacccccctccctgaccctgtcccactatgtttccaactccata |
39120221 |
T |
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| Q |
210 |
atcagaaggtcctgaaccaagaattatc |
237 |
Q |
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||||| |||||||||||||||||||||| |
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| T |
39120222 |
atcagcaggtcctgaaccaagaattatc |
39120249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 38611546 - 38611334
Alignment:
| Q |
17 |
aaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatacttac-ttgggctgagtggcactacaa |
115 |
Q |
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||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||| |
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| T |
38611546 |
aaatcgtcaacaaaacgcttcagcagtacctacggtgttttctgcacgacaagcctaaactctgggggcgatacttacattgggccgaatgggactacaa |
38611447 |
T |
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| Q |
116 |
tactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccctccctgtcccactatgtttccaactccataatcaga |
215 |
Q |
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||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
38611446 |
tacagcaagtcactctgccacaggtttgtctgtgtttcaggttgtctatagtcgcgaaccaccttccctgtcccattatgtttccaactccataatcagc |
38611347 |
T |
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| Q |
216 |
aggtcctgaacca |
228 |
Q |
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|||||||| |||| |
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| T |
38611346 |
aggtcctggacca |
38611334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 39117812 - 39118035
Alignment:
| Q |
17 |
aaatcatcaacaaaacgcttcagcagtacttacgatgttttgtgcacgacaagcctaaactctgggggcgatac--ttac-ttgggctgagtggcactac |
113 |
Q |
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||||| ||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||| | |
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| T |
39117812 |
aaatcgtcaacaaaacgtttcagcagtagctacggtgttttgtgcacgacaagcctaaactctgggggcaatacaattacattggtccaagtggcacttc |
39117911 |
T |
|
| Q |
114 |
aatactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccctccctgtcccactatgtttccaactccataatca |
213 |
Q |
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||||| | |||||||||||||||||| ||||||| |||||||||||| |||||| || |||| |||||||||||||| | ||||||||||||||||||| |
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| T |
39117912 |
aatacaggaagtcactctgccacagggttgtctgtgtttcaggttgtttatagtcgcgaaccaccctccctgtcccattctgtttccaactccataatct |
39118011 |
T |
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| Q |
214 |
gaaggtcctgaaccaagaattatc |
237 |
Q |
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| |||||||| |||||||| |||| |
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| T |
39118012 |
gcaggtcctgtaccaagaactatc |
39118035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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