View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_47 (Length: 245)
Name: NF13096_low_47
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26460952 - 26461172
Alignment:
| Q |
1 |
aaacaaagaaactaccttgagttgtgatgagcctataagcatgtcctaaagtgagagtgtcatcaggcttaagcaacttaacacgagtgaaaagcacagg |
100 |
Q |
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| T |
26460952 |
aaacaaagaaactaccttgagttgtgatgagcctataagcatgtcctaaagtgagagtgtcatcaggcttaagcaacttaacacgagtgaaaagcacagg |
26461051 |
T |
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| Q |
101 |
cttcttcacctcattattactactattctctccttcttgttcttgaggcaatggcatgatgagtgacacataataaccaggattggctctcatgacataa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26461052 |
cttcttcacctcattat---tactattctctccttcttgttcttgaggcaatggcatgatgagtgacacataataaccaggatttgctctcatgacataa |
26461148 |
T |
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| Q |
201 |
cttgcactcactgaccaatacaat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
26461149 |
cttgcactcactgaccaatacaat |
26461172 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 15406879 - 15406954
Alignment:
| Q |
13 |
taccttgagttgtgatgagcctataagcatgtcctaaagtgagagtgtcatcaggcttaagcaacttaacacgagt |
88 |
Q |
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|||||||| | |||||||||||||||||||| || | | | ||||| |||| |||| ||||||||||||||||||| |
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| T |
15406879 |
taccttgattagtgatgagcctataagcatgaccaagattaagagtttcattaggcctaagcaacttaacacgagt |
15406954 |
T |
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