View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_5 (Length: 581)
Name: NF13096_low_5
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 34139808 - 34140371
Alignment:
| Q |
1 |
tcctccaacatccacaactcgccttctccggtcatacaaatcagcaggctcaagtgcatcatctctcatgtcttcagtccaatgacctggatttattata |
100 |
Q |
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| T |
34139808 |
tcctccaacatccacaactcgcattctccggtcatacaaatcagcaggctcaagtgcatcatctctcatgtcttcagtccaatgacctggatttattata |
34139907 |
T |
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| Q |
101 |
tgatcatatacaattgacaaaaacctgtaaaaccaaaatgcttctttcttgtgttggatgaatcttggctgagaagaaggccttgcgggtgagatgctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34139908 |
tgatcatatacaattgacaaaaacctgtaaaaccaaaatgcttctttcttgtgttggatgaatcttggctgagaagaaggccttgcggatgagatgctgc |
34140007 |
T |
|
| Q |
201 |
atcgcggtgtcaagtttcttgcaccgtatttgttgccatatgaaactacattatttctgaagaaacacttgttgtgaaagttaagactcacagaacctaa |
300 |
Q |
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| T |
34140008 |
atcgcggtgtcaagtttcttgcaccgtatttgttgccatatgaaactacattatttctgaagaaacacttcttgtgaaagttaagactcacagaacctaa |
34140107 |
T |
|
| Q |
301 |
tccagatggaactatgctattaataagctttgtattttcagcaccactaagcattaaggaggccatggagttgcagaaattaatactaagattcttccaa |
400 |
Q |
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| T |
34140108 |
tccagatggaactatgctattaataagctttgtattttcagcaccactaagcattaaggaggccatggagttgcagaaattaatactaagactcttccaa |
34140207 |
T |
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| Q |
401 |
ggaaattaacacttttatatatataatttatgacagtttatatcatagaaatgagacatggatgatttggaatttgcaactgaattggaaaatggtaagg |
500 |
Q |
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| T |
34140208 |
ggaaattaacacttttatatatataatttatgacagtttatatcatagaaatgagacatggatggtttggaatttgcaactgaattggaaaatggtaagg |
34140307 |
T |
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| Q |
501 |
tacataatgttatggattatgctgcaatataactaagtggatatgcaccacataatacatgtga |
564 |
Q |
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| T |
34140308 |
tacataatgttatggattatgctgcaatataactaagtggatatgcaccacataatacatgtga |
34140371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 31517302 - 31517187
Alignment:
| Q |
41 |
tcagcaggctcaagtgcatcatctctcatgtcttcagtccaatgacctggatttattatatgatcatatacaattgacaaaaacctgtaaaaccaaaatg |
140 |
Q |
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||||| || ||||| || ||||||||||| ||||||||||||||||| || ||||| | ||| ||||| |||||||| | |||||| ||||||||||||| |
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| T |
31517302 |
tcagctggttcaagagcttcatctctcatatcttcagtccaatgaccagggtttataacatggtcatacacaattgaaagaaacctataaaaccaaaatg |
31517203 |
T |
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| Q |
141 |
cttctttcttgtgttg |
156 |
Q |
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||||||| |||||||| |
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| T |
31517202 |
cttcttttttgtgttg |
31517187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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