View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_51 (Length: 237)
Name: NF13096_low_51
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10992212 - 10991991
Alignment:
| Q |
1 |
tgattgattgtaaaagatacttaatgttaaagagtcccacatcagacaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggtt |
100 |
Q |
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| T |
10992212 |
tgattgattgtaaaagatacttaatgttaaagagtcccacatcagacaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggtt |
10992113 |
T |
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| Q |
101 |
ttagaagattagagagaaacagaaaaatttaaaacaaactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatt |
200 |
Q |
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| T |
10992112 |
ttagaagattagagagaaacagaaaaatttaaaacaaactttattgacttgagaatataatgcttctcatattattaatcagcaactaggcataggtatt |
10992013 |
T |
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| Q |
201 |
tatatacaaaaactgtaaaaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10992012 |
tatatacaaaaactgtaaaaaa |
10991991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 12748105 - 12748235
Alignment:
| Q |
46 |
acaaaattgatagaacaaattgagagaaagtgaagaaacttataagtgcagggttttagaagattagagagaaacagaa-aaatttaaaacaaactttat |
144 |
Q |
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| T |
12748105 |
acaaatttgatagaacaaatagagagaaagtgaagaaacatataaatgcaaggtttgagaagaccaaagag-aacagaagaactgaaaaataaactttat |
12748203 |
T |
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| Q |
145 |
tgacttgagaatataatgcttctcatattatt |
176 |
Q |
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| T |
12748204 |
taacttgagaatataatacttcttatattatt |
12748235 |
T |
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