View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_52 (Length: 237)
Name: NF13096_low_52
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 41723095 - 41722878
Alignment:
| Q |
1 |
catgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttgg |
100 |
Q |
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| T |
41723095 |
catgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttgg |
41722996 |
T |
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| Q |
101 |
caccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtg |
200 |
Q |
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| T |
41722995 |
caccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtg |
41722896 |
T |
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| Q |
201 |
ttcacacatgttcacaat |
218 |
Q |
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|||||||||||||||||| |
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| T |
41722895 |
ttcacacatgttcacaat |
41722878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41718369 - 41718154
Alignment:
| Q |
1 |
catgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41718369 |
catgctatttataggaccgtaaaagccatgcctcaaccattttcatttattaccatagataatagccaaactgccaaccaatttatgttgacaatgttgg |
41718270 |
T |
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| Q |
101 |
caccgaaaatctgaatggtaaattgcaaagcccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtg |
200 |
Q |
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| T |
41718269 |
caccgaaaatctgaatggtaaattgcaaaacccttttgtcaaacatgtattactgccatgtgaaaacatatcaacaaaaggtgactttatggcttatgtg |
41718170 |
T |
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| Q |
201 |
ttcacacatgttcaca |
216 |
Q |
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| T |
41718169 |
ttcacacatgttcaca |
41718154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 48781360 - 48781266
Alignment:
| Q |
73 |
gccaaccaatttatgttgacaatgttggcaccgaaaatctgaatggtaaattgcaaa--gcccttttgtcaaacatgtattactgccatgtgaaaa |
166 |
Q |
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| T |
48781360 |
gccaaccaatttatgttgaaaatatatgcaccaaaaatataaatgttaaat-gcaaaaagccctttcgtcaaacaccttttactgccatgtgaaaa |
48781266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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