View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13096_low_6 (Length: 570)
Name: NF13096_low_6
Description: NF13096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13096_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 555
Target Start/End: Complemental strand, 36872153 - 36871616
Alignment:
| Q |
18 |
ggaacaaatctctttgtcttaacttccaacctttaacatccaaaacagaaacacaagaaactctttgttgtaaaactctcttatctctctttggtatagc |
117 |
Q |
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| T |
36872153 |
ggaacaaatctctttgtcttaacttccaacctttaacatccaaaacagaaacacaagaaactctttgttgtaaaactctcttatctctctttggtatagc |
36872054 |
T |
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| Q |
118 |
acttgctgaaaatctcaataagaactcacttttcaattttcacaacataactacctcaacctcttgtctacataattaccaaactagcctcacttcaatt |
217 |
Q |
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| T |
36872053 |
acttgctgaaaatctcaataagaactcacttttcaattttcacaacataactacctcaacctcttgtctacataattaccaaactagcctcacttcaatt |
36871954 |
T |
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| Q |
218 |
tcacttcctaacaaccttgtctcttcatgctttgatccatctcaatttgttgccacaccagacacatgtgctcaaattcaaaccaaacaagattggctta |
317 |
Q |
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| T |
36871953 |
tcacttcctaacaaccttgtctcttcatgctttgatccatctcaatttgttgccacaccagacacatgtgctcaaattcaaaccaaacaagattggctta |
36871854 |
T |
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| Q |
318 |
acaaagttgattcaacagatttaactgttcttgataatgtttgtgaaccagatttaacagattcagatcattgtcatgtttgtaaaaatcaagggtttaa |
417 |
Q |
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| T |
36871853 |
acaaagttgattcaacagatttaactgttcttgataatgtttgtgaaccagatttaacagattcggatcattgtcatgtttgtaaaaatcaagggtttaa |
36871754 |
T |
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| Q |
418 |
ggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgtttttattttacaatactatatatagctggaattgtgaataaactt |
517 |
Q |
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| T |
36871753 |
ggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgtttttattttacaatactatatatagctggaattgtgaataaactt |
36871654 |
T |
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| Q |
518 |
ggtcctgagagtacaggtgttttggcttgcattcttat |
555 |
Q |
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| T |
36871653 |
ggtcctgagagtacaggtgttttggcttgcattcttat |
36871616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 36878344 - 36878283
Alignment:
| Q |
416 |
aaggttcaacagatgctgactaaatttgatggtaatagttcacattctcaagattgttttta |
477 |
Q |
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||||||||| ||| ||||| | || |||||||||||||||||||||| ||||||| ||||| |
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| T |
36878344 |
aaggttcaagagaagctgaatcaaattgatggtaatagttcacattccaaagattgctttta |
36878283 |
T |
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