View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13097_high_4 (Length: 221)
Name: NF13097_high_4
Description: NF13097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13097_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 55 - 205
Target Start/End: Complemental strand, 29084467 - 29084317
Alignment:
| Q |
55 |
aacaagcattggaagattgcatccatcaaccacgctaacatcatagcaatcttgttgatcgccttgaccaattgtaatctcgaaaagtgcatcacgtgga |
154 |
Q |
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| T |
29084467 |
aacaagcattggaagattgcatccatcaaccatgctaacatcatagcaatcttgttgatcaccttgaccaattgtaatctcgaaaagtccatcacgtgga |
29084368 |
T |
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| Q |
155 |
gctgcaccattcccatcacattcaagtcttccaccacagtcacctgtttgg |
205 |
Q |
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| T |
29084367 |
gctgcaccattcccatcacattcaagtcttccaccacaatcacctgtttgg |
29084317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 29091852 - 29091656
Alignment:
| Q |
11 |
aacctgtggcattacatgcactattaccatatacacct--tggtagaacaagcattggaagattgcatccatcaaccacgctaacatcatagcaatcttg |
108 |
Q |
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| T |
29091852 |
aacctgtggcattacatgcacttttaccatatacacctcttggtagaacaagcattgggagattgtatccatcaaccatactaacatcatagtaatcttg |
29091753 |
T |
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| Q |
109 |
ttgatcgccttgaccaattgtaatctcgaaaagtgcatcacgtggagctgcaccattcccatcacattcaagtcttccaccacagtcacctgtttgg |
205 |
Q |
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| T |
29091752 |
ttgatcaccttgtccaattgtaatctcgaaaagtgaagtaggtggagctgcaccattcccatcacattcaagtcttccaccacaatcacccgtttgg |
29091656 |
T |
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