View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13097_low_1 (Length: 441)
Name: NF13097_low_1
Description: NF13097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13097_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 10461462 - 10461886
Alignment:
| Q |
1 |
aaaccatgttatatttaattcagggcctaaataaatgcatgtgattgtaattagtacgtcaaaacaatcatcagtgacacaagaagaagacagaattata |
100 |
Q |
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| T |
10461462 |
aaaccatgttatatttaattcagggcctaaataaatgcatgtgattgtaattagtacgtcaaaacaatcatcagtgacacaagaagaagacagaattata |
10461561 |
T |
|
| Q |
101 |
gtgaagagtgataattaattatagtaacaagctgtaatctccaggtcatcccctgttttgtctttggatgcactgatataagacaagtatagctatagca |
200 |
Q |
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| T |
10461562 |
gtaaagagtgataattaattatagtaacaagctgtaatctccaggtcatcccctgttttgtctttggatgcactgatataagacaagtatagctatagca |
10461661 |
T |
|
| Q |
201 |
tcaattgatatatttaagagcagaaaatattcaaaggggaattgtcaaacaatgattaaataatatgaaaatgcagcatgataagcaaaccttattacct |
300 |
Q |
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| T |
10461662 |
tcaattgatatatttaagagcagaaaatattcaaaggggaattgtcaaacaatgattaaataatatgaaaatgcagcatgataagcaaaccttattacct |
10461761 |
T |
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| Q |
301 |
taatgttataaaaaactttaccattggagataatcggaaagttgctgtagcttccgcgctgaaacctgttattccaccagcagggaacaagtatgtcaat |
400 |
Q |
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| T |
10461762 |
taatgttataaaaaactttaccattggagataatcggaaagttgctgtagcttccgcgctgaaacctgttattccaccagcagggaacaagtatgtcaat |
10461861 |
T |
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| Q |
401 |
agcgtcggggatgttgggtccaaac |
425 |
Q |
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| T |
10461862 |
agcgtcggggatgttgggtccaaac |
10461886 |
T |
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