View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13097_low_2 (Length: 369)
Name: NF13097_low_2
Description: NF13097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13097_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 10461022 - 10461390
Alignment:
| Q |
1 |
ttagcttttcaattttataccttttaattttaaaagttcaattttatacatgaatagcagacacacagatgcctaatactactaaagaaggggaacaaat |
100 |
Q |
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| T |
10461022 |
ttagcttttcaattttataccttttaattttaaaagttcaattttatacatgaatagcagacacacagatgcctaatactactaaagaaggggaacaaat |
10461121 |
T |
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| Q |
101 |
taaaaggcctaaccgaaaaccaaaagatagcataggaaattaggacgacaagcaaaacaccatctattatgtttgaaattccaaatatcaaatttacacg |
200 |
Q |
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| T |
10461122 |
taaaaggcctaaccgaaaaccaaaagatagcataggaaattaggacgacaagcaaaacaccatctattatgtttgaaattccaaatatcaaatttacacg |
10461221 |
T |
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| Q |
201 |
taagcttctatagtttgaaattttgattattggattctgctttcctattcatcaatgagtctggccataaaatgattgtaacatcaaattatttgattca |
300 |
Q |
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| T |
10461222 |
taagcttctatagtttgaaattttgattattggattctgctttcctattcatcaatgagtctggccataaaatgattgtaacatcaaattatttgattca |
10461321 |
T |
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| Q |
301 |
taatttaatgggaatttaataacaatatatcatgtaaataaaggacatttaggtacagagcatagtact |
369 |
Q |
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| T |
10461322 |
taatttaatgggaatttaataacaatatatcatgtaaataaaggacatttaggtacagagcatagtact |
10461390 |
T |
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