View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13098_high_10 (Length: 245)

Name: NF13098_high_10
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13098_high_10
NF13098_high_10
[»] chr7 (2 HSPs)
chr7 (13-141)||(45242541-45242669)
chr7 (146-229)||(45242420-45242503)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 45242669 - 45242541
Alignment:
Q  13 ccaaggaagaaccactgattggtagtcgaaaccagatgctcaaagaaaaacggcctatatgtcatttaggtatggtgtaaagaagtgttcaaaacaatta 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  45242669 ccaaggaagaaccagtgattggtagtcgaaaccagatgctcaaagaaaaacgacctatatgtcatttaggtatggtgtaaagaagtgttgaaaacaatta 45242570  T
Q  113 ttatctaggattttgtatgtatgtgtatc 141  Q
    |||||||||||||||||||||||||||||    
T  45242569 ttatctaggattttgtatgtatgtgtatc 45242541  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 45242503 - 45242420
Alignment:
Q  146 atttgactatgttacatgaagtgtacttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatatt 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45242503 atttgactatgttacatgaagtgtatttttggtttgttttattgttgaaatctcttaacaacacacctagtttctgtacatatt 45242420  T

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