View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13098_high_12 (Length: 237)

Name: NF13098_high_12
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13098_high_12
NF13098_high_12
[»] chr1 (10 HSPs)
chr1 (1-123)||(15323326-15323449)
chr1 (150-216)||(15323233-15323299)
chr1 (162-211)||(29144320-29144369)
chr1 (162-218)||(17408765-17408821)
chr1 (162-218)||(18471358-18471414)
chr1 (163-218)||(21032280-21032335)
chr1 (161-210)||(25361966-25362013)
chr1 (162-211)||(1704935-1704984)
chr1 (155-208)||(21365985-21366038)
chr1 (163-211)||(9103693-9103741)
[»] chr6 (10 HSPs)
chr6 (162-218)||(8776908-8776964)
chr6 (162-218)||(33001229-33001285)
chr6 (163-217)||(31959214-31959268)
chr6 (159-211)||(17302638-17302690)
chr6 (163-218)||(17841530-17841585)
chr6 (162-191)||(7490124-7490153)
chr6 (159-211)||(7938170-7938222)
chr6 (162-210)||(13360313-13360361)
chr6 (162-194)||(34446658-34446690)
chr6 (162-218)||(34595197-34595253)
[»] chr4 (3 HSPs)
chr4 (162-218)||(35161099-35161155)
chr4 (163-218)||(30982808-30982863)
chr4 (162-218)||(23292926-23292982)
[»] chr3 (6 HSPs)
chr3 (159-218)||(55401138-55401197)
chr3 (159-211)||(15796220-15796272)
chr3 (162-216)||(34185052-34185106)
chr3 (162-218)||(14209187-14209243)
chr3 (163-191)||(15864922-15864950)
chr3 (160-216)||(17276792-17276848)
[»] scaffold0380 (1 HSPs)
scaffold0380 (162-218)||(8664-8720)
[»] scaffold0024 (1 HSPs)
scaffold0024 (163-215)||(68172-68224)
[»] chr5 (3 HSPs)
chr5 (162-218)||(39698615-39698671)
chr5 (160-218)||(21522824-21522882)
chr5 (160-218)||(21533390-21533448)
[»] chr8 (8 HSPs)
chr8 (162-224)||(11944733-11944795)
chr8 (160-218)||(22652050-22652108)
chr8 (160-194)||(34127170-34127204)
chr8 (166-215)||(4498369-4498418)
chr8 (162-215)||(8343033-8343086)
chr8 (162-211)||(29510233-29510282)
chr8 (162-218)||(8343390-8343446)
chr8 (162-210)||(13397622-13397670)
[»] chr7 (7 HSPs)
chr7 (162-216)||(17852065-17852119)
chr7 (162-211)||(9778575-9778624)
chr7 (163-216)||(32287404-32287457)
chr7 (161-218)||(43027403-43027460)
chr7 (162-194)||(1042376-1042408)
chr7 (162-218)||(5409771-5409827)
chr7 (167-211)||(13770766-13770810)
[»] chr2 (7 HSPs)
chr2 (160-218)||(30717457-30717515)
chr2 (160-218)||(35056942-35057000)
chr2 (162-211)||(34006930-34006979)
chr2 (162-218)||(15972936-15972992)
chr2 (160-220)||(18054714-18054774)
chr2 (162-210)||(18840953-18841001)
chr2 (159-211)||(19580222-19580274)
[»] scaffold0652 (1 HSPs)
scaffold0652 (163-211)||(403-451)
[»] scaffold0361 (1 HSPs)
scaffold0361 (162-218)||(14590-14646)


Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15323449 - 15323326
Alignment:
Q  1 aaggaaacacacaaattaattaagcgaccaaatgtctaatttaactttaaattatggtttagaattctcataatttgaaccagtaccatcctt-ggttgt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15323449 aaggaaacacacaaattaattaagcgaccaaatgtctaatttaactttaaattatggtttagaattctcataatttgaaccagtaccatccttaggttgt 15323350  T
Q  100 ttgcctttcaagtttgtccaatcc 123  Q
    ||||||||||||||||||||||||    
T  15323349 ttgcctttcaagtttgtccaatcc 15323326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 15323299 - 15323233
Alignment:
Q  150 taggaatactagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtc 216  Q
    ||||||||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||||| ||||    
T  15323299 taggaatactagctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgtgtc 15323233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 29144320 - 29144369
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||||||||| |||||||| || || |||||||||||||    
T  29144320 ctatgaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 17408821 - 17408765
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||| |||||||||  |||||||||||| | |||||||||||| ||||||    
T  17408821 ctatgaagcacagacactcttcagattaggtgtatcttggtgtcggacacgtgtcgt 17408765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 18471414 - 18471358
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||| |||||||||| | | ||||||||| |||||||||||||||| ||||||    
T  18471414 ctatgaagtacggacactcctcgaattaggtgtgtttcggtgtcggacacgtgtcgt 18471358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 21032335 - 21032280
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||| ||||||| |||||||||| || | ||| |||||||||||||||||    
T  21032335 tatgaagcacagacactccttggattaggcgtctctcgatgtcggacacatgtcgt 21032280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 25362013 - 25361966
Alignment:
Q  161 gctatgaagcacggacactctttggattaggtgtatttcggtgtcggaca 210  Q
    |||||||||||||||||||||| ||||||||||  || ||||||||||||    
T  25362013 gctatgaagcacggacactcttcggattaggtg--ttccggtgtcggaca 25361966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 1704935 - 1704984
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||| |||||||| |||||||||| || | ||||||||||||||    
T  1704935 ctatgaagcatggacactccttggattaggcgtgtctcggtgtcggacac 1704984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 21365985 - 21366038
Alignment:
Q  155 atactagctatgaagcacggacactctttggattaggtgtatttcggtgtcgga 208  Q
    |||||| ||||||||||||||||||| | |||||||| || | |||||||||||    
T  21365985 atactacctatgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 21366038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 9103741 - 9103693
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||||||||  ||||||| || |||||||||| |||||    
T  9103741 tatgaagcacggacactcttaagattaggcgtttttcggtgtccgacac 9103693  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 8776908 - 8776964
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| | ||||||||||| | |||||||||||||| ||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgt 8776964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 33001229 - 33001285
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||  ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgt 33001285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 31959268 - 31959214
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcg 217  Q
    |||||||||||||||||| | ||||||||||| |  |||||||||||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtcg 31959214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 17302690 - 17302638
Alignment:
Q  159 tagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||| |||||||| |||||||||||||||| || || ||||||||||    
T  17302690 tagctatgaaacacggacattctttggattaggtgtgttccgatgtcggacac 17302638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 17841530 - 17841585
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||||||||| | |||||||| || | || ||||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtgtctcagtgtcggacacatgtcgt 17841585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 7490153 - 7490124
Alignment:
Q  162 ctatgaagcacggacactctttggattagg 191  Q
    ||||||||||||||||||||||||||||||    
T  7490153 ctatgaagcacggacactctttggattagg 7490124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 7938222 - 7938170
Alignment:
Q  159 tagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||||||||||||||| | |||| ||| || | ||||||||||||||    
T  7938222 tagctatgaagcacggacactcctcggatcaggcgtgtctcggtgtcggacac 7938170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 13360313 - 13360361
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggaca 210  Q
    ||||||||||||||||||||| |||||||| || | || ||||||||||    
T  13360313 ctatgaagcacggacactcttcggattaggcgtgtctcagtgtcggaca 13360361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 34446690 - 34446658
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgt 194  Q
    ||||||||||||||||||| |||||||||||||    
T  34446690 ctatgaagcacggacactccttggattaggtgt 34446658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 34595253 - 34595197
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| | ||||||||||| |  ||||||| ||||| ||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgt 34595197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 35161155 - 35161099
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||||||||| || ||||||||||| || ||||||||||||| ||||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgt 35161099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 30982808 - 30982863
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||||||||||||| || |  ||||||||||||| ||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgt 30982863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 23292926 - 23292982
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| | |||||||| || |  ||||||||||||| ||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgt 23292982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 55401197 - 55401138
Alignment:
Q  159 tagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||||||||||||| | |||||||| || | |||||||||||||| ||||||    
T  55401197 tagctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgt 55401138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 15796220 - 15796272
Alignment:
Q  159 tagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||| ||||||||||||||||| || || |||||| ||||||    
T  15796220 tagctatgaagcacgaacactctttggattaggcgtgttccggtgttggacac 15796272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 34185052 - 34185106
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtc 216  Q
    ||||||||||||||||||| | |||||||| || |  ||||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacatgtc 34185106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 14209243 - 14209187
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||  |||||||||||||||  || ||||| |||| ||||||    
T  14209243 ctatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgt 14209187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 15864950 - 15864922
Alignment:
Q  163 tatgaagcacggacactctttggattagg 191  Q
    |||||||||||||||||||||||||||||    
T  15864950 tatgaagcacggacactctttggattagg 15864922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 17276848 - 17276792
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtc 216  Q
    ||||||||||||||||||||  | ||||||||||  | |||||||||||||| ||||    
T  17276848 agctatgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacgtgtc 17276792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 8720 - 8664
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| |||||||||| ||||  | ||||||||||| ||||||    
T  8720 ctatgaagcacggacactccttggattaggcgtatcccagtgtcggacacgtgtcgt 8664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 68172 - 68224
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgt 215  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||    
T  68172 tatgaagtacggacattctttggattaggtgtatttcagtgtcgaacatatgt 68224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 39698671 - 39698615
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| | |||||||| || | ||||||||||| |||||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgt 39698615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21522882 - 21522824
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||| ||||||||||||||||||||||| || |  ||||| ||||||| ||||||    
T  21522882 agctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgt 21522824  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 21533448 - 21533390
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||| ||||||||||||||||||||||| || |  ||||| ||||||| ||||||    
T  21533448 agctatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgt 21533390  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 11944795 - 11944733
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgtatatga 224  Q
    |||||||||||| |||||| | |||||||| || | ||||||||||| ||||||||| |||||    
T  11944795 ctatgaagcacgaacactcatcggattaggcgtgtctcggtgtcggatacatgtcgtgtatga 11944733  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 22652108 - 22652050
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||||| | |||||||  || |  ||||||||||||||||||||    
T  22652108 agctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgt 22652050  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 34127170 - 34127204
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgt 194  Q
    ||||||||||||||||||||| |||||||||||||    
T  34127170 agctatgaagcacggacactccttggattaggtgt 34127204  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 4498418 - 4498369
Alignment:
Q  166 gaagcacggacactctttggattaggtgtatttcggtgtcggacacatgt 215  Q
    ||||||||||||||| |  |||||||||| ||||||||||||| ||||||    
T  4498418 gaagcacggacactcctctgattaggtgtgtttcggtgtcggatacatgt 4498369  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 8343086 - 8343033
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgt 215  Q
    ||||||||||| ||||||||| |||||||| || |  |||||||||||||||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgt 8343033  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 29510233 - 29510282
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||||||| | ||||||||||| |  |||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 29510282  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 8343446 - 8343390
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||| ||||||||| |||||||| || |  ||||||||||||| ||||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcgt 8343390  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 13397670 - 13397622
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggaca 210  Q
    ||||||||||||||||||| ||| |||||| || | |||||||||||||    
T  13397670 ctatgaagcacggacactccttgaattaggcgtgtctcggtgtcggaca 13397622  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 17852119 - 17852065
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtc 216  Q
    ||||||||||||||||||| | | ||||||||| | |||||||||||||| ||||    
T  17852119 ctatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtc 17852065  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 9778624 - 9778575
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||||||| |||||||||| || |  |||||||||||||    
T  9778624 ctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacac 9778575  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 32287404 - 32287457
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtc 216  Q
    |||||||||||||||||| | ||||||||||| |  ||||||||||||| ||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtc 32287457  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 43027403 - 43027460
Alignment:
Q  161 gctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||||||||||| | |||||||| || |  ||||||||||||| ||||||    
T  43027403 gctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgt 43027460  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 1042376 - 1042408
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgt 194  Q
    ||||||| |||||||||||||||||||||||||    
T  1042376 ctatgaaacacggacactctttggattaggtgt 1042408  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 5409771 - 5409827
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||| | |||||||| || |  ||||||||||||| ||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgt 5409827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 13770810 - 13770766
Alignment:
Q  167 aagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||||||||| |||||||| || || |||||||||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacac 13770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 30717457 - 30717515
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||||| |||||||||| ||||  | |||||| |||| ||||||    
T  30717457 agctatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgt 30717515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 218
Target Start/End: Complemental strand, 35057000 - 35056942
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    ||||||||||||||||||||| |  ||||||| || |||| ||||||||||| ||||||    
T  35057000 agctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgt 35056942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 34006930 - 34006979
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    ||||||||||||||||||| ||| ||||||||| || ||||||| |||||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacac 34006979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 15972992 - 15972936
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||||||| |||| ||||||||||| |  ||| ||||||||| ||||||    
T  15972992 ctatgaagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgt 15972936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 18054714 - 18054774
Alignment:
Q  160 agctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgtat 220  Q
    |||||||||||||||||| || |||||| ||| || |||| ||||| ||||| ||||||||    
T  18054714 agctatgaagcacggacattccttggataaggcgtgtttccgtgtcagacacgtgtcgtat 18054774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 18840953 - 18841001
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggaca 210  Q
    ||||||||||||||||||| | ||||||||||| |  ||||||||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggaca 18841001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 19580222 - 19580274
Alignment:
Q  159 tagctatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||||||| ||||||||| ||||||| ||| ||| ||||| ||||||    
T  19580222 tagctatgaagcacagacactcttcggattagatgtgttttggtgttggacac 19580274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 403 - 451
Alignment:
Q  163 tatgaagcacggacactctttggattaggtgtatttcggtgtcggacac 211  Q
    |||||||||||||||||| | ||||||||||| |  |||||||||||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 14646 - 14590
Alignment:
Q  162 ctatgaagcacggacactctttggattaggtgtatttcggtgtcggacacatgtcgt 218  Q
    |||||||||||| |||||| || ||||||| || | |||||||||||||| ||||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgt 14590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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