View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_high_14 (Length: 232)
Name: NF13098_high_14
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 30652586 - 30652664
Alignment:
| Q |
134 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagactag |
212 |
Q |
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| T |
30652586 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagactag |
30652664 |
T |
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Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 30652449 - 30652524
Alignment:
| Q |
1 |
agcagaagaaaatcaaggaagtagtcatttggattttggaaatgtgtaaccgtttgtacttagctctttgatgagg |
76 |
Q |
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| T |
30652449 |
agcagaagaaaatcaaggaagtagtcatttggattttggaaatgtgtaaccgtttgtgcttagctctttgatgagg |
30652524 |
T |
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