View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_high_4 (Length: 442)
Name: NF13098_high_4
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 10918667 - 10919076
Alignment:
| Q |
16 |
atcaaataaattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacgtttttagaatcaatcnnnnnnnnn |
115 |
Q |
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| T |
10918667 |
atcaaataaattataatgtttcaacatcttgagccaacctccacctcaaactgagatctaggttttgacagttacatttttaaaatcaatcaaaaagaag |
10918766 |
T |
|
| Q |
116 |
nnnnnnnnnnnn-gatattttttaaatccatgtattttactcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttaga |
214 |
Q |
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| T |
10918767 |
aaaacaaaaaaaagatattttttaaatccatgtattttactcacggcagccataatgtttctggaaaaacccatcgacaaagacgattgaccttcttaga |
10918866 |
T |
|
| Q |
215 |
atgcacgatttagagatgaaaacaaaaggaaagaaaatattacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgat |
314 |
Q |
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| T |
10918867 |
atgcacgatttagggatgaaaacaaaaggaaagaaaatattacggtcctgagaccaatatgtattcc--agctaccattttcagccaaaccaataccgat |
10918964 |
T |
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| Q |
315 |
ctaggtaagtaggtgttgaaagtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaa |
412 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
10918965 |
ctagacaagtaggtgttgaaagtttgttttggtgttgatgaaaaacgtatcagatgaagataaaatggtttgacgaaagggttcagtgatatgagatgaa |
10919064 |
T |
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| Q |
413 |
agggttcatcat |
424 |
Q |
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| T |
10919065 |
agggttcatcat |
10919076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 154 - 424
Target Start/End: Original strand, 43958553 - 43958823
Alignment:
| Q |
154 |
ctcactgcaaccatgatgtttctggaaaaatccatcgacaaagatgattgatctttttagaatgcacgatttagagatgaaaacaaaaggaaagaaaata |
253 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||| |||||| ||| ||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
43958553 |
ctcactgcagccatgatgtttctggaaaaacccatcgacaaagacgattgaccttcttagaattcacgatttagggatgaaaacaaaaggaaagaaaata |
43958652 |
T |
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| Q |
254 |
ttacggtcctgagaccaatatgtattccaaatctaacattttcagccaaaccagtactgatctaggtaagtaggtgttgaaagtttgttttggtgttgat |
353 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43958653 |
ttacggtcctgagaccaatatgtattcc--agctaccattttcagccaaaccagtaccgatctaggcaagtaggtgttgaaagtttgttttggtgttgat |
43958750 |
T |
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| Q |
354 |
gaaaaacgtatcagatgaagataaaatggtttgatgaa--ggttcagtgatatgagatgaaagggttcatcat |
424 |
Q |
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| T |
43958751 |
gaaaaacctatcagatgaagataaaatggtttgatgaaagggttaagtgatatgagatgaaagggttcatcat |
43958823 |
T |
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