View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_high_6 (Length: 420)
Name: NF13098_high_6
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 2504972 - 2505357
Alignment:
| Q |
15 |
tatacatgactttaatacacatacattaataatagtttgagaaaatataagtgattaaatatatctatatgtgtcgccgacacaataaaactgaaataa- |
113 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
2504972 |
tatacatgactctaatacacatgcattaataatagtttgagaaaatataagtgattaaatatatctat--gtgtcgccgacacaataaaactgaattaaa |
2505069 |
T |
|
| Q |
114 |
ttaccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaattacaatcaagactata |
213 |
Q |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505070 |
ttatcaatatactattagaagaaacaatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaattacaatcaagactata |
2505169 |
T |
|
| Q |
214 |
gtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacacacaaaatcaaatgaaagcatcggcattcattcacgagcaacaacaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505170 |
gtgaagaaagattaatacagaaggccatacaaagagggcttgttattcaatacac--aatcaaatgaaagcatcggcattcattcacgagcaacaacaag |
2505267 |
T |
|
| Q |
314 |
cacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttctacatacac |
403 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2505268 |
cacttgtttgccaacatttttgccactaaatatgccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttctacatacac |
2505357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 98 - 403
Target Start/End: Original strand, 2511671 - 2511978
Alignment:
| Q |
98 |
aataaaactgaaataa-ttaccaatatactattagaagaaataatgaagaagcatataaaagagattttatttatccttagatgtcactgaaataagcaa |
196 |
Q |
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|||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
2511671 |
aataaaactgaattaagttatcaatatactattagaagaaacaatgaagaagcatataatagagatcttatttatcattagatgtcactgaagtaagcaa |
2511770 |
T |
|
| Q |
197 |
ttacaatcaagactatagtgaagaaagattaatacagaaggccatacaaagagtgcttgttattcaacacacaaaa-tcaaatgaaagcatcggcattca |
295 |
Q |
| |
|
||||| |||| ||||| |||||| |||||||| ||| |||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| ||||||| |
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|
| T |
2511771 |
ttacagtcaacactatggtgaaggaagattaacacaaaaggccatacaaagagggcttgttattcaacacaaaaaaatcaaatgaaagcatctgcattca |
2511870 |
T |
|
| Q |
296 |
ttcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttct |
395 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||||||||||||| |
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| T |
2511871 |
ttcacgagcaacaacaagcacttgtttgccaacatttttaccactaaatatgccaaccaaagctgcaggacctttctcaagaccctcagctatgtcttcc |
2511970 |
T |
|
| Q |
396 |
acatacac |
403 |
Q |
| |
|
|||||||| |
|
|
| T |
2511971 |
acatacac |
2511978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 2516141 - 2516249
Alignment:
| Q |
295 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
394 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||| || ||||| || |||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2516141 |
attcacgagcaacaacaaccacttgtttaccaacattgcgaccgctaaagatgccaaccaaggctgcaggacctttctcaagaccctcagctatgtcttc |
2516240 |
T |
|
| Q |
395 |
tacatacac |
403 |
Q |
| |
|
|||||||| |
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|
| T |
2516241 |
cacatacac |
2516249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 2429874 - 2429763
Alignment:
| Q |
292 |
ttcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtc |
391 |
Q |
| |
|
|||| ||| |||||||||||| ||||||||| |||||||||| |||||||| | |||||||| ||| ||||||| ||||||||||||||||||||||| |
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|
| T |
2429874 |
ttcactcatgagcaacaacaaccacttgtttaccaacattttgaccactaaacagaccaaccaaagctgcagggccattctcaagaccctcagctatgtc |
2429775 |
T |
|
| Q |
392 |
ttctacatacac |
403 |
Q |
| |
|
||| |||||||| |
|
|
| T |
2429774 |
ttccacatacac |
2429763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 403
Target Start/End: Complemental strand, 2432869 - 2432745
Alignment:
| Q |
279 |
gaaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagac |
378 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||||||||| |||||||| ||||| ||| |||| ||| || |||| || |||||||||| |
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|
| T |
2432869 |
gaaagcatctgcattcattcatgagcaacaacaaccacttgtttaccaacattgcgaccactgtataggccaatcaatgcagcaggaccattctcaagac |
2432770 |
T |
|
| Q |
379 |
cctcagctatgtcttctacatacac |
403 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
2432769 |
cctcagctatgtcttccacatacac |
2432745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 403
Target Start/End: Original strand, 2496568 - 2496676
Alignment:
| Q |
295 |
attcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagaccctcagctatgtcttc |
394 |
Q |
| |
|
|||| |||||||| |||| ||||||||| |||||||| |||||| ||| |||| ||||||| ||||||| |||||||||||||||| ||||||||| |
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|
| T |
2496568 |
attcccgagcaacgacaaccacttgtttaccaacattgcgaccactatataggccaatcaaggctgcagggccattctcaagaccctcagttatgtcttc |
2496667 |
T |
|
| Q |
395 |
tacatacac |
403 |
Q |
| |
|
|||||||| |
|
|
| T |
2496668 |
aacatacac |
2496676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 403
Target Start/End: Complemental strand, 2436229 - 2436106
Alignment:
| Q |
280 |
aaagcatcggcattcattcacgagcaacaacaagcacttgtttgccaacatttttgccactaaatattccaaccaaggcttcagggcctttctcaagacc |
379 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||| ||||||||| |||||||| |||||| ||| |||| ||| || |||| || ||||||||||| |
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|
| T |
2436229 |
aaagcatatgcattcattcatgagcaacagcaaccacttgtttaccaacattgcgaccactatataggccaatcaatgcagcaggaccattctcaagacc |
2436130 |
T |
|
| Q |
380 |
ctcagctatgtcttctacatacac |
403 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
2436129 |
ctcagctatgtcttccacatacac |
2436106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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