View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_high_8 (Length: 292)
Name: NF13098_high_8
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 169 - 283
Target Start/End: Original strand, 31793239 - 31793353
Alignment:
| Q |
169 |
tcaattacaagtatatcatagcaaatcataaatttattaaaataagatctcttaagtttcaattaattaaactcttatttgtcaattaaaacaataatac |
268 |
Q |
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| T |
31793239 |
tcaattacaagtatatcatagcaaatcataaatttattaaaataagatctcttaagtttcaattaattaaactcttgtttgtcaattaaaacaataatac |
31793338 |
T |
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| Q |
269 |
tccactcagaataat |
283 |
Q |
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||||||||||||||| |
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| T |
31793339 |
tccactcagaataat |
31793353 |
T |
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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 31793130 - 31793196
Alignment:
| Q |
60 |
gttaaattctacataaaagattttcgcaactaatccactgggttttactcatcacttaacggtataa |
126 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31793130 |
gttaaattctacataaaagatttttgcaactaatccactgggttttactcatcacttaacggtataa |
31793196 |
T |
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