View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13098_low_11 (Length: 240)

Name: NF13098_low_11
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13098_low_11
NF13098_low_11
[»] chr3 (3 HSPs)
chr3 (19-240)||(43186473-43186694)
chr3 (19-235)||(43193757-43193973)
chr3 (19-240)||(43179309-43179528)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 43186473 - 43186694
Alignment:
Q  19 tataaatatggaactagattgataaattgataaaccacacctctcttctcaagaacaaagaaaaatcacaagagttagcttagtgaaacttctttatttt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43186473 tataaatatggaactagtttgataaattgataaaccacacctctcttctcaagaacaaagaaaaatcacaagagttagcttagtgaaacttctttatttt 43186572  T
Q  119 gaaggatttaatcaatgtctcctttaagttgttctagaataacaatgttcagtttggttctatttgtcctcataatagggagtgtcaatgcacaactctc 218  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43186573 gagggatttaatcaatggctcctttaagttgttctagaataacaatgttcagtttggttctatttgtcctcataatagggagtgtcaatgcacaactctc 43186672  T
Q  219 tacaaacttttactcaaaaact 240  Q
    ||||||||||||||||||||||    
T  43186673 tacaaacttttactcaaaaact 43186694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 43193757 - 43193973
Alignment:
Q  19 tataaatatggaactagattgataaattgataaaccacacctctcttctcaagaacaaagaaaaatcacaagagttagcttagtgaaacttctttatttt 118  Q
    ||||||||||||||||| |  |||||||||||||||||||| |||||||||| |||||||| ||| ||| |||| ||||||||||||||||||| | ||     
T  43193757 tataaatatggaactagttctataaattgataaaccacaccactcttctcaataacaaagagaaaacactagagctagcttagtgaaacttctt-agttc 43193855  T
Q  119 gaaggattt-aatcaatgtctcctttaagttgttctagaataacaatgttcagtttggttctatttgtcctcataatagggagtgtcaatgcacaactct 217  Q
     |||  ||| ||||||||||  |||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  43193856 aaagatttttaatcaatgtcatctttaaattgttctagattaaccatgatcagtttggttctatttgtcctcataatagggagtgccaatgcacaacttt 43193955  T
Q  218 ctacaaacttttactcaa 235  Q
    ||||||  ||||||||||    
T  43193956 ctacaagtttttactcaa 43193973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 43179309 - 43179528
Alignment:
Q  19 tataaatatggaactagattgataaattgataaaccacacctctcttctcaagaacaaagaaaaatcacaagagttagcttagtgaaacttctttatttt 118  Q
    |||||||| |||||||| |   ||||||||||||||||||| |||||||||| |||||||| ||| ||| |||| ||||| ||||||||||  |||  |     
T  43179309 tataaatacggaactagttctgtaaattgataaaccacacccctcttctcaataacaaagagaaaacactagagctagctaagtgaaactt--ttacgta 43179406  T
Q  119 gaaggatttaatcaatgtctcctttaagttgttctagaataacaatgttcagtttggttctatttgtcctcataatagggagtgtcaatgcacaactctc 218  Q
      ||||||||||||||| ||||||||| |||||||||| |||| ||| ||||||| ||||||| ||| |||||||||||||||| |||||||||||| ||    
T  43179407 agaggatttaatcaatggctcctttaaattgttctagattaaccatgatcagtttagttctatctgttctcataatagggagtgccaatgcacaactttc 43179506  T
Q  219 tacaaacttttactcaaaaact 240  Q
    ||||||||||||||||||||||    
T  43179507 tacaaacttttactcaaaaact 43179528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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