View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13098_low_2 (Length: 501)
Name: NF13098_low_2
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_low_2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 60 - 501
Target Start/End: Original strand, 45242002 - 45242443
Alignment:
| Q |
60 |
caagcaaatctctaactttgaaagttctaaagccataagaaagtcaacaaaatcatattttatatacttaggatttcaataattcttgggccacaaaaaa |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45242002 |
caagcaaatctctaactttgaaagttctaaagccataagaaagtcaacaaaatcatattttata--cttaggatttcaataattcttgggccacaaaaaa |
45242099 |
T |
|
| Q |
160 |
gaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctata--cataccatatttaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45242100 |
gaacagataattgatcaagcatgacttaaccgtgtcacgtgacacaaacaaggtgtgtcgaaatcaccatatattcatcctatatacataccatatttaa |
45242199 |
T |
|
| Q |
258 |
atttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45242200 |
atttgatatattaaacccaaacaacactaccgtacaactaacacaggttgaaccaaaatttatgaaatagcagttgcagagtcctgagtggtttcaactt |
45242299 |
T |
|
| Q |
358 |
tcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacagcaaatgggttttcagcgataaggagaatgta |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
45242300 |
tcaagccatgcaagcagaatttgaaaataatacttagtcattcattccttttagaaaacccacagacaacaaatgggttttcagggataaggagaatgta |
45242399 |
T |
|
| Q |
458 |
gatagggcgtagtgacgtacaatatgtacagaaactaggtgtgt |
501 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45242400 |
gatggggcgtagtgacgtacaatatgtacagaaactaggtgtgt |
45242443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45241886 - 45241952
Alignment:
| Q |
1 |
cttcatcctatattgaagaaatttactaagatatagggaaacataagaattattaagagcaagcaaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45241886 |
cttcatcctatattgaagaaatttactaagatatagggaaacataagaattattaagagcaagcaaa |
45241952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 11425493 - 11425447
Alignment:
| Q |
270 |
aaacccaaacaacactaccgtacaactaacacaggttgaaccaaaat |
316 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
11425493 |
aaacccaaacaacactaccatacgactaacacgtgttgaaccaaaat |
11425447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University