View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_low_3 (Length: 448)
Name: NF13098_low_3
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 48 - 437
Target Start/End: Original strand, 32370908 - 32371298
Alignment:
| Q |
48 |
tgataatctcaatgagtaatgtaggtaggtaggtaggtgtgttgttggttgcttttttattaagtattatgttttgttgtaattgcatgttgtattgctt |
147 |
Q |
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| T |
32370908 |
tgataatctcagtgagtaatgtaggtaggtaggta----tgttgttggttgctttttttttaagtattatgttttgttgtaattgcatgttgtattgctt |
32371003 |
T |
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| Q |
148 |
atgatttgattataggatgtatccaaatttgtttagtactacaattttatttggaatataaaatcaagaacatgtttctgtatgttgagtgttgactaga |
247 |
Q |
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| T |
32371004 |
atgatttgattataggatgtatccaaatttgtttagtactataatgttatttggaatataaaatcaagaacatgtttctgtatgttgagtgttgactaga |
32371103 |
T |
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| Q |
248 |
aaaagagtataaccacatgtgtgagtgtttctgaaagaagaagttatacttctcggaacttatcttggatttagttaatttttcaggatgttcattctac |
347 |
Q |
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| T |
32371104 |
aaaagagtataaccacatgtgtgagtgtttctgaatgaagaaattatacttctcggaacttatcttggatttagttaatttcccaggatgttcattctac |
32371203 |
T |
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| Q |
348 |
acttgtgtctaacaaatacgtgttttttatgtgttttgtatcagatacattcagttcccgatgaagggttgattg-----taggcttcatttcat |
437 |
Q |
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| T |
32371204 |
acttgtgtctaacaaagacgtgttttttgtgtgttttgtatcagatacattcagttcctgatgaagagttgattgtattgtaggcttcatttcat |
32371298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 32368572 - 32368727
Alignment:
| Q |
19 |
atgatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtaggtaggtgtgttgttggttgc-ttttttattaagtattat |
117 |
Q |
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| T |
32368572 |
atgatgaggacacatacacttgtttctgctgataatctcagtgagtaatgtaggtaggtaagt----gtgttgttggttgtattttttattaagtattat |
32368667 |
T |
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| Q |
118 |
gttttgttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaattt |
177 |
Q |
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| T |
32368668 |
gttttcttgtaattgcatgttgtattgcttatgatttgattataggatgtatccaaattt |
32368727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 32370557 - 32370693
Alignment:
| Q |
19 |
atgatgaggacacatacacttgtttctactgataatctcaatgagtaatgtaggtaggtaggtaggtgtgttgttggttgcttttttattaagtattatg |
118 |
Q |
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| T |
32370557 |
atgatgaggacacatacacttgtttctgctgataatctcagtgagtaatgtag----gtaggtaagtgtgttgttggttgcttttttatcaagtattata |
32370652 |
T |
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| Q |
119 |
ttttgttgtaattgcatgttgtattgcttatgatttgatta |
159 |
Q |
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| T |
32370653 |
tattgttgtaattgcatgttgtattgcttatgatttgatta |
32370693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 32355887 - 32356038
Alignment:
| Q |
76 |
gtaggtaggtgtgtt-gttggttgcttttttattaagtattatgttttgttgtaattgcatgttgtattgcttatgatttgattatagg----------- |
163 |
Q |
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| T |
32355887 |
gtaggtaggtgtgtttgttggttactgttttattaagtattaagttttgttgtaattgcatgttgtattgcttatgatttgattataggatgcagatata |
32355986 |
T |
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| Q |
164 |
-atgtatccaaatttgtttagtactacaattttatttggaatataaaatcaa |
214 |
Q |
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| T |
32355987 |
tatgtatccaaatttgtttagaactacaacgttatttggaatataaaatcaa |
32356038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 237 - 341
Target Start/End: Original strand, 32356091 - 32356195
Alignment:
| Q |
237 |
tgttgactagaaaaagagtataaccacatgtgtgagtgtttctgaaagaagaagttatacttctcggaacttatcttggatttagttaatttttcaggat |
336 |
Q |
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| T |
32356091 |
tgttgactagaaaaagagtattaccacatgtgtgagtatttctgaatgaagaagttatacttctcggaacttatattggattgagttaatttctcaaggt |
32356190 |
T |
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| Q |
337 |
gttca |
341 |
Q |
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| T |
32356191 |
gttca |
32356195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 32366253 - 32366182
Alignment:
| Q |
353 |
tgtctaacaaatacgtgttttttatgtgttttgtatcagatacattcagttcccgatgaagggttgattgta |
424 |
Q |
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| T |
32366253 |
tgtctaacaaagacgtgttttttgtgtgttttgtatcggatacaatcagttcccggtgaagagttgattgta |
32366182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 32370695 - 32370743
Alignment:
| Q |
187 |
tacaattttatttggaatataaaatcaagaacatgtttctgtatgttga |
235 |
Q |
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| T |
32370695 |
tacaatgttatttggaatataaaatcaagaacatgtttttgtatgttga |
32370743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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