View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13098_low_5 (Length: 441)
Name: NF13098_low_5
Description: NF13098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13098_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 37 - 371
Target Start/End: Original strand, 45886413 - 45886745
Alignment:
| Q |
37 |
gttgtcgcggcttcaattgttttcacgttgccatttcaacaacattaaaagaaaaaacctttattgtcagcttgtatcattacaatgtgcctttaactaa |
136 |
Q |
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| T |
45886413 |
gttgtcgcggcttcaattgttttcacgttgccatttcaacaa--ttaaaagaaaaaacctttattgtcggcttgtatcattacaatgtgcctttaactaa |
45886510 |
T |
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| Q |
137 |
aattatgctaccttaaaatattctttttggatcattgtttcatagaattgttttattttgacacataatgttgtcatcaaaattcgacaacttaaatggt |
236 |
Q |
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| T |
45886511 |
aattatgataccttaaaatattctttttggatcattgtttcatagaactgttttattttgaaacataatgttgtcatcaaaattcgacaacttaaatggt |
45886610 |
T |
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| Q |
237 |
gaatacaatataaaatgcgattaactatgttcttcaaccaagacatcacgatttattaatcatcaattgaccacaattaatcacgattatgaattttatg |
336 |
Q |
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| T |
45886611 |
gaatacaataaaaaatgcgattaactatgttcttcaaccaagatatcacgatttattaatcatcaattgaccacaattaatcacgattatgaattttatg |
45886710 |
T |
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| Q |
337 |
agccactacttccattcaaattttaaagagcgcac |
371 |
Q |
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| T |
45886711 |
agccactactttcattcaaatttttaatagcgcac |
45886745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 895732 - 895762
Alignment:
| Q |
6 |
gtagataattctcatgactaattatacaaca |
36 |
Q |
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| T |
895732 |
gtagataattctcatgactaattatacaaca |
895762 |
T |
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