View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_high_1 (Length: 681)
Name: NF13099_high_1
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 153 - 538
Target Start/End: Original strand, 31942702 - 31943088
Alignment:
| Q |
153 |
aacaaacaataattaattcccgttagagacatttttagttagttcggggtgccagagggcaaagcaaaggcgctaaagagcaannnnnnnataatnnnnn |
252 |
Q |
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| T |
31942702 |
aacaaacaataattaattcccgttagtgacatttttagttagttcggggtgccagagggcaaatcaaaggcgctaaagagcaattgttttataa--aaaa |
31942799 |
T |
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| Q |
253 |
nnnnggtgaagggctgttgggcctaaatctattagcgtttttggtctttttatacgattttctatatataccccccagaaaaaa-gccttgctgtataca |
351 |
Q |
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| T |
31942800 |
aaaaggtgacgggctgttgggcctaaatctattagcgtttttggtctttttatacgattttctatatataccccccagaaaaaaagccttgctatataca |
31942899 |
T |
|
| Q |
352 |
tcacctgttaaaaatttgaccccccta-caagcctagcccttaggtcgtcgtaccctcagcatacggacagggccgaacctgatgttttcatagaaattg |
450 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
31942900 |
tcacctgttaaaaatttgacccccccaacaagcctagcccttaggtcgtcgtaccctcagcatacggacagggccggacctgatgttttcatagaaactg |
31942999 |
T |
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| Q |
451 |
atgtaattaggactttgataagtgtttgacttatactt-aagaaaaattcctttatgtattagagcacacacttattaacattaccttt |
538 |
Q |
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| T |
31943000 |
atgtaattaggactttgataagtgtttgacttatacttaaagaaaatttcctttatgtattagagcacacacttgttagcattaccttt |
31943088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 31942521 - 31942681
Alignment:
| Q |
8 |
tgagatgaagttggcttgtgtggagattagtatggatcaatctaatggccataatgagttggcgcccaaagtattagggttagggtttggagtgtgtgtt |
107 |
Q |
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| T |
31942521 |
tgagatgaagttggcttgtgtggagattagtatggatcaatctaatggccagaatgagttggcgcccaaagtattaggattagggtttggactgagtgtt |
31942620 |
T |
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| Q |
108 |
gcaatgttaattatgattattaataagtatgatataccactcaacaacaaacaataattaa |
168 |
Q |
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| T |
31942621 |
gcaatgttaattatgattagaaataagtatgatataccactcaacaacaaacaataattaa |
31942681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 625 - 662
Target Start/End: Original strand, 31943175 - 31943212
Alignment:
| Q |
625 |
cgaatctaatactttgagagatggttaaggaagcacta |
662 |
Q |
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| T |
31943175 |
cgaatctaatactttgagagatggttaaggaagcacta |
31943212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 40 - 139
Target Start/End: Original strand, 29861840 - 29861944
Alignment:
| Q |
40 |
tggatcaatctaatggccataatgagttggcgcccaaa-----gtattagggttagggtttggagtgtgtgttgcaatgttaattatgattattaataag |
134 |
Q |
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| T |
29861840 |
tggatccatctaacggtcataatgagttggcgcccaaattaaagtattagggttagggtttggagtgtgtgttgcaatgttaattaggattagaaataag |
29861939 |
T |
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| Q |
135 |
tatga |
139 |
Q |
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||||| |
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| T |
29861940 |
tatga |
29861944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 2738191 - 2738288
Alignment:
| Q |
23 |
ttgtgtggagattagtatggatcaatctaatggccataatgagttggcgcccaaagtattagggttagggtttggagtgtgtgttgcaatgttaatta |
120 |
Q |
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| T |
2738191 |
ttgtgtggtgattagttttgatccatccaacggccggaatgaattggcgcctaaaatattagggttagggtttggagtgattgttgcaatgttaatta |
2738288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 44546135 - 44546019
Alignment:
| Q |
23 |
ttgtgtggagattagtatggatcaatctaatggccataatgagttggcgcccaaagtattagggttagggtttggagtgtgtgttgcaatgttaattatg |
122 |
Q |
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|||||||||||||||| | |||| ||| || |||| ||||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
44546135 |
ttgtgtggagattagttttgatccatccaacggccggaatgaattggcgcctaaaatattagggttagggtttggagtgattgttgcaatgttaattagg |
44546036 |
T |
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| Q |
123 |
attattaataagtatga |
139 |
Q |
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| T |
44546035 |
attagaaataagtatga |
44546019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 24260352 - 24260264
Alignment:
| Q |
8 |
tgagatgaagttggcttgtgtggagattagtatggatcaatctaatggccataatgagttggcgcccaaagtattagggttagggtttg |
96 |
Q |
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|||| ||||||||| |||||| ||||||||||| |||||||| |||| ||| ||||| |||| ||| ||| |||||||||||||||| |
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| T |
24260352 |
tgaggtgaagttggattgtgttgagattagtattgatcaatccaatgcccaaaatgaattggagccaaaaactttagggttagggtttg |
24260264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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