View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13099_high_15 (Length: 314)
Name: NF13099_high_15
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13099_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 9389228 - 9389527
Alignment:
| Q |
1 |
atctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9389228 |
atctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
9389327 |
T |
|
| Q |
101 |
agggcaagggccacaggtacagcaactgcgtttccaacttgcatgtacctgcattaaagatgaaactattgagtgccatgcaatacataataatgggaag |
200 |
Q |
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| T |
9389328 |
agggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacctgcattaaagatgaaactattgagtgccatgcaatacataataatgggaag |
9389427 |
T |
|
| Q |
201 |
gnnnnnnnnnttaatgaaagatagaaaatgttaataactaatctcacttataactagtttagtcttctacatttagcaatctttctaaccatgatgttag |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9389428 |
aaaaaaaaatataatgaaagatagaaaatgttactaactaatctcacttataactagtttagtcttctacatttagcaatctttctaaccataatgttag |
9389527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 31938875 - 31939165
Alignment:
| Q |
1 |
atctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
100 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31938875 |
atctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
31938974 |
T |
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| Q |
101 |
agggcaagggccacaggtacagcaactgcgtttccaacttgcatgtacctgcattaaagat-gaaactattgagtgccatgcaatacataataatgggaa |
199 |
Q |
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| T |
31938975 |
agggcaagggccacaggaacagcaactgcgtttccaacttgaatatacctgcattaaagatggaaactattgagtgtcatgctatacataataatggaaa |
31939074 |
T |
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| Q |
200 |
ggnnnnnnnnnttaatgaaagatagaaaatgttaataactaatctc-acttataactagtttagtcttctacatttagcaatctttctaaccat |
292 |
Q |
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| T |
31939075 |
---aaaaaattataatgaaagatagaatatgtcactaactaatctcaaactataactactttagtcttctacatttagcaatctttctaaccat |
31939165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 13535513 - 13535667
Alignment:
| Q |
1 |
atctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
100 |
Q |
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|
|||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||| |
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| T |
13535513 |
atctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatcagaaagtcctagaatagccaaacctaatgtgtatcca |
13535612 |
T |
|
| Q |
101 |
agggcaagggccacaggtacagcaactgcgtttccaacttgcatgtacctgcatt |
155 |
Q |
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||||||||||| || || ||||| || || ||||||||||| | |||||||||| |
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| T |
13535613 |
agggcaagggctaccggaacagcgaccgcatttccaacttgagtatacctgcatt |
13535667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 1337044 - 1337339
Alignment:
| Q |
1 |
atctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatcca |
100 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||| |
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| T |
1337044 |
atctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaaaggaccgtcatcggagtgtcctagaattgccaaacctaatgtgtatcca |
1337143 |
T |
|
| Q |
101 |
agggcaagggccacaggtacagcaactgcgtttccaacttgcatgtacctg--cattaaagatgaaactattgagtgccatgcaatacataataatggga |
198 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| | |
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| T |
1337144 |
agggcaagggcaacaggaacagcaactgcgtttccaacttgcatgtacctgcacattaaagatggaactattgagtgccatgctatacataataatggaa |
1337243 |
T |
|
| Q |
199 |
ag-gnnnnnnnnnttaatgaaagatagaaaatgttaataactaatctc-acttataactagtttagtcttctacatttagcaatctttctaaccat |
292 |
Q |
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|| ||| ||||||||||||||||| | ||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1337244 |
agaagacaaaaagttatacaaagatagaaaatgttactgactaaactcaaactataactactttagtcttctacatttagcaatctttctaaccat |
1337339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 161
Target Start/End: Original strand, 5639137 - 5639295
Alignment:
| Q |
3 |
ctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacctaatgtgtatccaag |
102 |
Q |
| |
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|||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||| ||| ||||||||| ||||||||||| || |
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| T |
5639137 |
ctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaagtgctaaacccaatgtgtatccgag |
5639236 |
T |
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| Q |
103 |
ggcaagggccacaggtacagcaactgcgtttccaacttgcatgtacctgcattaaagat |
161 |
Q |
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|||||| ||||||| |||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
5639237 |
ggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagat |
5639295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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