View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13099_high_21 (Length: 215)

Name: NF13099_high_21
Description: NF13099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13099_high_21
NF13099_high_21
[»] chr4 (3 HSPs)
chr4 (102-195)||(24543447-24543540)
chr4 (68-122)||(24543541-24543595)
chr4 (19-55)||(24543623-24543659)
[»] chr8 (1 HSPs)
chr8 (67-119)||(39421574-39421626)
[»] chr6 (1 HSPs)
chr6 (88-116)||(3859408-3859436)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 24543540 - 24543447
Alignment:
Q  102 gttaatcaatggttgataatatttactttgaactataattaaagtgagttattcacttaaaaggagttagatgcataaaaaatcaatacatgag 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543540 gttaatcaatggttgataatatttactttgaactataattaaagtgagttattcacttaaaaggagttagatgcataaaaaatcaatacatgag 24543447  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 24543595 - 24543541
Alignment:
Q  68 gttatgatgcacctctaatgtctaactttgatttgttaatcaatggttgataata 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543595 gttatgatgcacctctaatgtctaactttgatttgttaatcaatggttgataata 24543541  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 24543659 - 24543623
Alignment:
Q  19 gtttcatcaatgcctgttggagaaaataatgttaaga 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  24543659 gtttcatcaatgcctgttggagaaaataatgttaaga 24543623  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 39421574 - 39421626
Alignment:
Q  67 tgttatgatgcacctctaatgtctaactttgatttgttaatcaatggttgata 119  Q
    ||||||| || || |||||| |||| |||||||||||||||||||||||||||    
T  39421574 tgttatggtgtacttctaatatctacctttgatttgttaatcaatggttgata 39421626  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 116
Target Start/End: Original strand, 3859408 - 3859436
Alignment:
Q  88 tctaactttgatttgttaatcaatggttg 116  Q
    |||||||||||||||||||||||||||||    
T  3859408 tctaactttgatttgttaatcaatggttg 3859436  T

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